diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index d04374e372d16c8589bf9900623034849f59ee23..2961e9c640895604f7c8071e0df922cbdd033c55 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -11,10 +11,6 @@ repos: - id: ruff args: [ --fix ] - id: ruff-format -- repo: https://github.com/biomejs/pre-commit - rev: v1.9.4 - hooks: - - id: biome-check # https://github.com/astral-sh/ty/issues/269 - repo: local hooks: @@ -29,14 +25,8 @@ repos: rev: "0.23.0" hooks: - id: deptry - name: deptry for lynxkite-app - entry: bash -c 'cd lynxkite-app && deptry .' - - id: deptry - name: deptry for lynxkite-core - entry: bash -c 'cd lynxkite-core && deptry .' - - id: deptry - name: deptry for lynxkite-graph-analytics - entry: bash -c 'cd lynxkite-graph-analytics && deptry .' + name: deptry for lynxkite-bio + entry: bash -c 'cd lynxkite-bio && deptry .' - id: deptry - name: deptry for lynxkite-pillow-example - entry: bash -c 'cd lynxkite-pillow-example && deptry .' + name: deptry for lynxkite-lynxscribe + entry: bash -c 'cd lynxkite-lynxscribe && deptry .' diff --git a/lynxkite-app/.gitignore b/lynxkite-app/.gitignore deleted file mode 100644 index 7ce53a136c8026741c18ec412f80ab4d04468530..0000000000000000000000000000000000000000 --- a/lynxkite-app/.gitignore +++ /dev/null @@ -1,5 +0,0 @@ -/src/lynxkite_app/web_assets -!/src/lynxkite_app/web_assets/__init__.py -!/src/lynxkite_app/web_assets/assets/__init__.py -data/ -!/web/tests/data diff --git a/lynxkite-app/MANIFEST.in b/lynxkite-app/MANIFEST.in deleted file mode 100644 index 73314e1d2f25aa9aedc4720099259ac7e37ae240..0000000000000000000000000000000000000000 --- a/lynxkite-app/MANIFEST.in +++ /dev/null @@ -1,2 +0,0 @@ -graft web -prune web/node_modules diff --git a/lynxkite-app/README.md b/lynxkite-app/README.md deleted file mode 100644 index 95cbff88cf018d5566241cd1d1f1edbe938b9a07..0000000000000000000000000000000000000000 --- a/lynxkite-app/README.md +++ /dev/null @@ -1,31 +0,0 @@ -# LynxKite MM - -This is an experimental rewrite of [LynxKite](https://github.com/lynxkite/lynxkite). It is not compatible with the -original LynxKite. The primary goals of this rewrite are: - -- Target GPU clusters instead of Hadoop clusters. We use Python instead of Scala, RAPIDS instead of Apache Spark. -- More extensible backend. Make it easy to add new LynxKite boxes. Make it easy to use our frontend for other purposes, - configuring and executing other pipelines. - -## Development - -To run the backend: - -```bash -uv pip install -e . -cd ../examples && LYNXKITE_RELOAD=1 lynxkite -``` - -To run the frontend: - -```bash -cd web -npm i -npm run dev -``` - -To update the frontend types with the backend types: - -```bash -$ uv run pydantic2ts --module lynxkite_app.main --output ./web/src/apiTypes.ts --json2ts-cmd "npx json-schema-to-typescript" -``` diff --git a/lynxkite-app/pyproject.toml b/lynxkite-app/pyproject.toml deleted file mode 100644 index e56103da2a35fee2159abe626ba45e653d066869..0000000000000000000000000000000000000000 --- a/lynxkite-app/pyproject.toml +++ /dev/null @@ -1,60 +0,0 @@ -[project] -name = "lynxkite" -version = "0.1.0" -description = "The LynxKite application, with web server and UI" -readme = "README.md" -requires-python = ">=3.11" -dependencies = [ - "fastapi[standard]>=0.115.6", - "griffe>=1.7.3", - "joblib>=1.5.1", - "lynxkite-core", - "pycrdt-websocket>=0.16", - "pycrdt>=0.12.26", - "pydantic>=2.11.7", - "sse-starlette>=2.2.1", - "uvicorn>=0.35.0", -] -classifiers = ["Private :: Do Not Upload"] - -[project.urls] -Homepage = "https://github.com/lynxkite/lynxkite-2000/" - -[dependency-groups] -dev = [ - "pydantic-to-typescript>=2.0.0", - "setuptools>=80.9.0", -] - -[tool.uv.sources] -lynxkite-core = { workspace = true } - -[build-system] -requires = ["setuptools", "wheel", "setuptools-scm"] -build-backend = "setuptools.build_meta" - -[tool.setuptools.packages.find] -namespaces = true -where = ["src"] - -[tool.setuptools.package-data] -"lynxkite_app.web_assets" = ["*"] -"lynxkite_app.web_assets.assets" = ["*"] - -[tool.setuptools] -py-modules = ["build_frontend"] -include-package-data = true - -[tool.setuptools.cmdclass] -build_py = "build_frontend.build_py" - -[project.scripts] -lynxkite = "lynxkite_app.__main__:main" - -[tool.deptry.package_module_name_map] -lynxkite-core = "lynxkite" -sse-starlette = "starlette" - -[tool.deptry.per_rule_ignores] -DEP002 = ["pycrdt-websocket", "griffe"] -DEP004 = ["setuptools"] diff --git a/lynxkite-app/src/build_frontend.py b/lynxkite-app/src/build_frontend.py deleted file mode 100644 index 6eafbbbf7826b77a08c5ed6a4aedd5dce1535edc..0000000000000000000000000000000000000000 --- a/lynxkite-app/src/build_frontend.py +++ /dev/null @@ -1,26 +0,0 @@ -"""Customized build process for setuptools.""" - -import subprocess -from setuptools.command.build_py import build_py as _build_py -from pathlib import Path -import shutil - - -class build_py(_build_py): - def run(self): - print("\n\nBuilding frontend...", __file__) - here = Path(__file__).parent.parent - frontend_dir = here / "web" - package_dir = here / "src" / "lynxkite_app" / "web_assets" - subprocess.check_call(["npm", "install"], cwd=frontend_dir) - subprocess.check_call(["npm", "run", "build"], cwd=frontend_dir) - print("files in", frontend_dir / "dist") - for file in (frontend_dir / "dist").iterdir(): - print(file) - # shutil.rmtree(package_dir) - shutil.copytree(frontend_dir / "dist", package_dir, dirs_exist_ok=True) - # (frontend_dir / "dist").rename(package_dir) - print("files in", package_dir) - for file in package_dir.iterdir(): - print(file) - super().run() diff --git a/lynxkite-app/src/lynxkite_app/__init__.py b/lynxkite-app/src/lynxkite_app/__init__.py deleted file mode 100644 index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..0000000000000000000000000000000000000000 diff --git a/lynxkite-app/src/lynxkite_app/__main__.py b/lynxkite-app/src/lynxkite_app/__main__.py deleted file mode 100644 index 06c477332763fcbf1bb338bd96440f659ee3fd8b..0000000000000000000000000000000000000000 --- a/lynxkite-app/src/lynxkite_app/__main__.py +++ /dev/null @@ -1,20 +0,0 @@ -import uvicorn -from .main import app # noqa: F401 -import os - - -def main(): - port = int(os.environ.get("PORT", "8000")) - reload = bool(os.environ.get("LYNXKITE_RELOAD", "")) - uvicorn.run( - "lynxkite_app.main:app", - host="0.0.0.0", - port=port, - reload=reload, - loop="asyncio", - proxy_headers=True, - ) - - -if __name__ == "__main__": - main() diff --git a/lynxkite-app/src/lynxkite_app/crdt.py b/lynxkite-app/src/lynxkite_app/crdt.py deleted file mode 100644 index 369cb3f0d7b9371baac26f0dc709fa6a349772dd..0000000000000000000000000000000000000000 --- a/lynxkite-app/src/lynxkite_app/crdt.py +++ /dev/null @@ -1,342 +0,0 @@ -"""CRDT is used to synchronize workspace state for backend and frontend(s).""" - -import asyncio -import contextlib -import enum -import pathlib -import fastapi -import os.path -import pycrdt.websocket -import pycrdt.store.file -import uvicorn.protocols.utils -import builtins -from lynxkite.core import workspace, ops - -router = fastapi.APIRouter() - - -def ws_exception_handler(exception, log): - if isinstance(exception, builtins.ExceptionGroup): - for ex in exception.exceptions: - if not isinstance(ex, uvicorn.protocols.utils.ClientDisconnected): - log.exception(ex) - else: - log.exception(exception) - return True - - -class WorkspaceWebsocketServer(pycrdt.websocket.WebsocketServer): - async def init_room(self, name: str) -> pycrdt.websocket.YRoom: - """Initialize a room for the workspace with the given name. - - The workspace is loaded from ".crdt" if it exists there, or from a JSON file, or a new workspace is created. - """ - crdt_path = pathlib.Path(".crdt") - path = crdt_path / f"{name}.crdt" - assert path.is_relative_to(crdt_path), f"Path '{path}' is invalid" - ystore = pycrdt.store.file.FileYStore(path) - ydoc = pycrdt.Doc() - ydoc["workspace"] = ws = pycrdt.Map() - # Replay updates from the store. - try: - for update, timestamp in [(item[0], item[-1]) async for item in ystore.read()]: - ydoc.apply_update(update) - except pycrdt.store.YDocNotFound: - pass - if "nodes" not in ws: - ws["nodes"] = pycrdt.Array() - if "edges" not in ws: - ws["edges"] = pycrdt.Array() - if "env" not in ws: - ws["env"] = next(iter(ops.CATALOGS), "unset") - # We have two possible sources of truth for the workspaces, the YStore and the JSON files. - # In case we didn't find the workspace in the YStore, we try to load it from the JSON files. - try_to_load_workspace(ws, name) - ws_simple = workspace.Workspace.model_validate(ws.to_py()) - clean_input(ws_simple) - # Set the last known version to the current state, so we don't trigger a change event. - last_known_versions[name] = ws_simple - room = pycrdt.websocket.YRoom( - ystore=ystore, ydoc=ydoc, exception_handler=ws_exception_handler - ) - # We hang the YDoc pointer on the room, so it only gets garbage collected when the room does. - room.ws = ws # ty: ignore[unresolved-attribute] - - def on_change(changes): - task = asyncio.create_task(workspace_changed(name, changes, ws)) - # We have no way to await workspace_changed(). The best we can do is to - # dereference its result after it's done, so exceptions are logged normally. - task.add_done_callback(lambda t: t.result()) - - ws.observe_deep(on_change) - return room - - async def get_room(self, name: str) -> pycrdt.websocket.YRoom: - """Get a room by name. - - This method overrides the parent get_room method. The original creates an empty room, - with no associated Ydoc. Instead, we want to initialize the the room with a Workspace - object. - """ - if name not in self.rooms: - self.rooms[name] = await self.init_room(name) - room = self.rooms[name] - await self.start_room(room) - return room - - -class CodeWebsocketServer(WorkspaceWebsocketServer): - async def init_room(self, name: str) -> pycrdt.websocket.YRoom: - """Initialize a room for a text document with the given name.""" - crdt_path = pathlib.Path(".crdt") - path = crdt_path / f"{name}.crdt" - assert path.is_relative_to(crdt_path), f"Path '{path}' is invalid" - ystore = pycrdt.store.file.FileYStore(path) - ydoc = pycrdt.Doc() - ydoc["text"] = text = pycrdt.Text() - # Replay updates from the store. - try: - for update, timestamp in [(item[0], item[-1]) async for item in ystore.read()]: - ydoc.apply_update(update) - except pycrdt.store.YDocNotFound: - pass - if len(text) == 0: - if os.path.exists(name): - with open(name, encoding="utf-8") as f: - text += f.read().replace("\r\n", "\n") - room = pycrdt.websocket.YRoom( - ystore=ystore, ydoc=ydoc, exception_handler=ws_exception_handler - ) - # We hang the YDoc pointer on the room, so it only gets garbage collected when the room does. - room.text = text # ty: ignore[unresolved-attribute] - - def on_change(changes): - asyncio.create_task(code_changed(name, changes, text)) - - text.observe(on_change) - return room - - -last_ws_input = None - - -def clean_input(ws_pyd): - """Delete everything that we want to ignore for the purposes of change detection.""" - for node in ws_pyd.nodes: - node.data.display = None - node.data.input_metadata = None - node.data.error = None - node.data.status = workspace.NodeStatus.done - for p in list(node.data.params): - if p.startswith("_"): - del node.data.params[p] - if node.data.op_id == "Comment": - node.data.params = {} - node.position.x = 0 - node.position.y = 0 - node.width = 0 - node.height = 0 - if node.model_extra: - for key in list(node.model_extra.keys()): - delattr(node, key) - - -def crdt_update( - crdt_obj: pycrdt.Map | pycrdt.Array, - python_obj: dict | list, - non_collaborative_fields: set[str] = set(), -): - """Update a CRDT object to match a Python object. - - The types between the CRDT object and the Python object must match. If the Python object - is a dict, the CRDT object must be a Map. If the Python object is a list, the CRDT object - must be an Array. - - Args: - crdt_obj: The CRDT object, that will be updated to match the Python object. - python_obj: The Python object to update with. - non_collaborative_fields: List of fields to treat as a black box. Black boxes are - updated as a whole, instead of having a fine-grained data structure to edit - collaboratively. Useful for complex fields that contain auto-generated data or - metadata. - The default is an empty set. - - Raises: - ValueError: If the Python object provided is not a dict or list. - """ - if isinstance(python_obj, dict): - assert isinstance(crdt_obj, pycrdt.Map), "CRDT object must be a Map for a dict input" - for key, value in python_obj.items(): - if key in non_collaborative_fields: - crdt_obj[key] = value - elif isinstance(value, dict): - if crdt_obj.get(key) is None: - crdt_obj[key] = pycrdt.Map() - crdt_update(crdt_obj[key], value, non_collaborative_fields) - elif isinstance(value, list): - if crdt_obj.get(key) is None: - crdt_obj[key] = pycrdt.Array() - crdt_update(crdt_obj[key], value, non_collaborative_fields) - elif isinstance(value, enum.Enum): - crdt_obj[key] = str(value.value) - else: - crdt_obj[key] = value - elif isinstance(python_obj, list): - assert isinstance(crdt_obj, pycrdt.Array), "CRDT object must be an Array for a list input" - for i, value in enumerate(python_obj): - if isinstance(value, dict): - if i >= len(crdt_obj): - crdt_obj.append(pycrdt.Map()) - crdt_update(crdt_obj[i], value, non_collaborative_fields) - elif isinstance(value, list): - if i >= len(crdt_obj): - crdt_obj.append(pycrdt.Array()) - crdt_update(crdt_obj[i], value, non_collaborative_fields) - else: - if isinstance(value, enum.Enum): - value = str(value.value) - if i >= len(crdt_obj): - crdt_obj.append(value) - else: - crdt_obj[i] = value - else: - raise ValueError("Invalid type:", python_obj) - - -def try_to_load_workspace(ws: pycrdt.Map, name: str): - """Load the workspace `name`, if it exists, and update the `ws` CRDT object to match its contents. - - Args: - ws: CRDT object to udpate with the workspace contents. - name: Name of the workspace to load. - """ - if os.path.exists(name): - ws_pyd = workspace.Workspace.load(name) - crdt_update( - ws, - ws_pyd.model_dump(), - # We treat some fields as black boxes. They are not edited on the frontend. - non_collaborative_fields={"display", "input_metadata", "meta"}, - ) - - -last_known_versions = {} -delayed_executions = {} - - -async def workspace_changed(name: str, changes: list[pycrdt.MapEvent], ws_crdt: pycrdt.Map): - """Callback to react to changes in the workspace. - - Args: - name: Name of the workspace. - changes: Changes performed to the workspace. - ws_crdt: CRDT object representing the workspace. - """ - ws_pyd = workspace.Workspace.model_validate(ws_crdt.to_py()) - # Do not trigger execution for superficial changes. - # This is a quick solution until we build proper caching. - ws_simple = ws_pyd.model_copy(deep=True) - clean_input(ws_simple) - if ws_simple == last_known_versions.get(name): - return - last_known_versions[name] = ws_simple - # Frontend changes that result from typing are delayed to avoid - # rerunning the workspace for every keystroke. - if name in delayed_executions: - delayed_executions[name].cancel() - delay = min( - getattr(change, "keys", {}).get("__execution_delay", {}).get("newValue", 0) - for change in changes - ) - # Check if workspace is paused - if so, skip automatic execution - if getattr(ws_pyd, "paused", False): - print(f"Skipping automatic execution for {name} in {ws_pyd.env} - workspace is paused") - return - if delay: - task = asyncio.create_task(execute(name, ws_crdt, ws_pyd, delay)) - delayed_executions[name] = task - else: - await execute(name, ws_crdt, ws_pyd) - - -async def execute(name: str, ws_crdt: pycrdt.Map, ws_pyd: workspace.Workspace, delay: int = 0): - """Execute the workspace and update the CRDT object with the results. - - Args: - name: Name of the workspace. - ws_crdt: CRDT object representing the workspace. - ws_pyd: Workspace object to execute. - delay: Wait time before executing the workspace. The default is 0. - """ - if delay: - try: - await asyncio.sleep(delay) - except asyncio.CancelledError: - return - print(f"Running {name} in {ws_pyd.env}...") - cwd = pathlib.Path() - path = cwd / name - assert path.is_relative_to(cwd), f"Path '{path}' is invalid" - # Save user changes before executing, in case the execution fails. - ws_pyd.save(path) - ops.load_user_scripts(name) - ws_pyd.connect_crdt(ws_crdt) - ws_pyd.update_metadata() - if not ws_pyd.has_executor(): - return - with ws_crdt.doc.transaction(): - for nc in ws_crdt["nodes"]: - nc["data"]["status"] = "planned" - ws_pyd.normalize() - await ws_pyd.execute() - ws_pyd.save(path) - print(f"Finished running {name} in {ws_pyd.env}.") - - -async def code_changed(name: str, changes: pycrdt.TextEvent, text: pycrdt.Text): - contents = str(text).strip() + "\n" - with open(name, "w", encoding="utf-8") as f: - f.write(contents) - - -ws_websocket_server: WorkspaceWebsocketServer -code_websocket_server: CodeWebsocketServer - - -def get_room(name): - return ws_websocket_server.get_room(name) - - -@contextlib.asynccontextmanager -async def lifespan(app): - global ws_websocket_server - global code_websocket_server - ws_websocket_server = WorkspaceWebsocketServer(auto_clean_rooms=False) - code_websocket_server = CodeWebsocketServer(auto_clean_rooms=False) - async with ws_websocket_server: - async with code_websocket_server: - yield - print("closing websocket server") - - -def delete_room(name: str): - if name in ws_websocket_server.rooms: - del ws_websocket_server.rooms[name] - - -def sanitize_path(path): - return os.path.relpath(os.path.normpath(os.path.join("/", path)), "/") - - -@router.websocket("/ws/crdt/{room_name:path}") -async def crdt_websocket(websocket: fastapi.WebSocket, room_name: str): - room_name = sanitize_path(room_name) - server = pycrdt.websocket.ASGIServer(ws_websocket_server) - await server({"path": room_name, "type": "websocket"}, websocket._receive, websocket._send) - - -@router.websocket("/ws/code/crdt/{room_name:path}") -async def code_crdt_websocket(websocket: fastapi.WebSocket, room_name: str): - room_name = sanitize_path(room_name) - server = pycrdt.websocket.ASGIServer(code_websocket_server) - await server({"path": room_name, "type": "websocket"}, websocket._receive, websocket._send) diff --git a/lynxkite-app/src/lynxkite_app/main.py b/lynxkite-app/src/lynxkite_app/main.py deleted file mode 100644 index 75a28dc97d565d5be55609604e7a5e90d5c3cc6b..0000000000000000000000000000000000000000 --- a/lynxkite-app/src/lynxkite_app/main.py +++ /dev/null @@ -1,165 +0,0 @@ -"""The FastAPI server for serving the LynxKite application.""" - -import shutil -import pydantic -import fastapi -import importlib -import joblib -import pathlib -import pkgutil -from fastapi.staticfiles import StaticFiles -from fastapi.middleware.gzip import GZipMiddleware -import starlette.exceptions -from lynxkite.core import ops -from lynxkite.core import workspace -from . import crdt - -mem = joblib.Memory(".joblib-cache") -ops.CACHE_WRAPPER = mem.cache - - -def detect_plugins(): - plugins = {} - for _, name, _ in pkgutil.iter_modules(): - if name.startswith("lynxkite_") and name != "lynxkite_app": - print(f"Importing {name}") - plugins[name] = importlib.import_module(name) - if not plugins: - print("No LynxKite plugins found. Be sure to install some!") - return plugins - - -lynxkite_plugins = detect_plugins() -ops.save_catalogs("plugins loaded") - -app = fastapi.FastAPI(lifespan=crdt.lifespan) -app.include_router(crdt.router) -app.add_middleware(GZipMiddleware) - - -def _get_ops(env: str): - catalog = ops.CATALOGS[env] - res = {op.name: op.model_dump() for op in catalog.values()} - res.setdefault("Comment", ops.COMMENT_OP.model_dump()) - return res - - -@app.get("/api/catalog") -def get_catalog(workspace: str): - ops.load_user_scripts(workspace) - return {env: _get_ops(env) for env in ops.CATALOGS} - - -data_path = pathlib.Path() - - -@app.post("/api/delete") -async def delete_workspace(req: dict): - json_path: pathlib.Path = data_path / req["path"] - crdt_path: pathlib.Path = data_path / ".crdt" / f"{req['path']}.crdt" - assert json_path.is_relative_to(data_path), f"Path '{json_path}' is invalid" - json_path.unlink() - crdt_path.unlink() - crdt.delete_room(req["path"]) - - -class DirectoryEntry(pydantic.BaseModel): - name: str - type: str - - -def _get_path_type(path: pathlib.Path) -> str: - if path.is_dir(): - return "directory" - elif path.suffixes[-2:] == [".lynxkite", ".json"]: - return "workspace" - else: - return "file" - - -@app.get("/api/dir/list") -def list_dir(path: str): - path = data_path / path - assert path.is_relative_to(data_path), f"Path '{path}' is invalid" - return sorted( - [ - DirectoryEntry( - name=str(p.relative_to(data_path)), - type=_get_path_type(p), - ) - for p in path.iterdir() - if not p.name.startswith(".") - ], - key=lambda x: (x.type != "directory", x.name.lower()), - ) - - -@app.post("/api/dir/mkdir") -def make_dir(req: dict): - path = data_path / req["path"] - assert path.is_relative_to(data_path), f"Path '{path}' is invalid" - assert not path.exists(), f"{path} already exists" - path.mkdir() - - -@app.post("/api/dir/delete") -def delete_dir(req: dict): - path: pathlib.Path = data_path / req["path"] - assert all([path.is_relative_to(data_path), path.exists(), path.is_dir()]), ( - f"Path '{path}' is invalid" - ) - shutil.rmtree(path) - - -@app.get("/api/service/{module_path:path}") -async def service_get(req: fastapi.Request, module_path: str): - """Executors can provide extra HTTP APIs through the /api/service endpoint.""" - module = lynxkite_plugins[module_path.split("/")[0]] - return await module.api_service_get(req) - - -@app.post("/api/service/{module_path:path}") -async def service_post(req: fastapi.Request, module_path: str): - """Executors can provide extra HTTP APIs through the /api/service endpoint.""" - module = lynxkite_plugins[module_path.split("/")[0]] - return await module.api_service_post(req) - - -@app.post("/api/upload") -async def upload(req: fastapi.Request): - """Receives file uploads and stores them in DATA_PATH.""" - form = await req.form() - for file in form.values(): - file_path = data_path / "uploads" / file.filename - assert file_path.is_relative_to(data_path), f"Path '{file_path}' is invalid" - with file_path.open("wb") as buffer: - shutil.copyfileobj(file.file, buffer) - return {"status": "ok"} - - -@app.post("/api/execute_workspace") -async def execute_workspace(name: str): - """Trigger and await the execution of a workspace.""" - room = await crdt.get_room(name) - ws_pyd = workspace.Workspace.model_validate(room.ws.to_py()) - await crdt.execute(name, room.ws, ws_pyd) - - -class SPAStaticFiles(StaticFiles): - """Route everything to index.html. https://stackoverflow.com/a/73552966/3318517""" - - async def get_response(self, path: str, scope): - try: - return await super().get_response(path, scope) - except ( - fastapi.HTTPException, - starlette.exceptions.HTTPException, - ) as ex: - if ex.status_code == 404: - return await super().get_response(".", scope) - else: - raise ex - - -static_dir = SPAStaticFiles(packages=[("lynxkite_app", "web_assets")], html=True) -app.mount("/", static_dir, name="web_assets") diff --git a/lynxkite-app/src/lynxkite_app/web_assets/__init__.py b/lynxkite-app/src/lynxkite_app/web_assets/__init__.py deleted file mode 100644 index 0dd4526deca93c24c6dff8ba07dc25f11d422bd4..0000000000000000000000000000000000000000 --- a/lynxkite-app/src/lynxkite_app/web_assets/__init__.py +++ /dev/null @@ -1 +0,0 @@ -"""The build process (uv build) puts the frontend build artifacts here.""" diff --git a/lynxkite-app/src/lynxkite_app/web_assets/assets/__init__.py b/lynxkite-app/src/lynxkite_app/web_assets/assets/__init__.py deleted file mode 100644 index 7a8adc0cd1a17ed2841e7e9504980fa67e3cb038..0000000000000000000000000000000000000000 --- a/lynxkite-app/src/lynxkite_app/web_assets/assets/__init__.py +++ /dev/null @@ -1 +0,0 @@ -"""More frontend build artifacts.""" diff --git a/lynxkite-app/tests/test_crdt.py b/lynxkite-app/tests/test_crdt.py deleted file mode 100644 index 2bd94fdb5140574be8867c78de1331f5f9a39673..0000000000000000000000000000000000000000 --- a/lynxkite-app/tests/test_crdt.py +++ /dev/null @@ -1,72 +0,0 @@ -from enum import Enum -import pycrdt -import pytest -from lynxkite_app.crdt import crdt_update - - -@pytest.fixture -def empty_dict_workspace(): - ydoc = pycrdt.Doc() - ydoc["workspace"] = ws = pycrdt.Map() - yield ws - - -@pytest.fixture -def empty_list_workspace(): - ydoc = pycrdt.Doc() - ydoc["workspace"] = ws = pycrdt.Array() - yield ws - - -class MyEnum(int, Enum): - VALUE = 1 - - -@pytest.mark.parametrize( - "python_obj,expected", - [ - ( - { - "key1": "value1", - "key2": { - "nested_key1": "nested_value1", - "nested_key2": ["nested_value2"], - "nested_key3": MyEnum.VALUE, - }, - }, - { - "key1": "value1", - "key2": { - "nested_key1": "nested_value1", - "nested_key2": ["nested_value2"], - "nested_key3": "1", - }, - }, - ) - ], -) -def test_crdt_update_with_dict(empty_dict_workspace, python_obj, expected): - crdt_update(empty_dict_workspace, python_obj) - assert empty_dict_workspace.to_py() == expected - - -@pytest.mark.parametrize( - "python_obj,expected", - [ - ( - [ - "value1", - {"nested_key1": "nested_value1", "nested_key2": ["nested_value2"]}, - MyEnum.VALUE, - ], - [ - "value1", - {"nested_key1": "nested_value1", "nested_key2": ["nested_value2"]}, - "1", - ], - ), - ], -) -def test_crdt_update_with_list(empty_list_workspace, python_obj, expected): - crdt_update(empty_list_workspace, python_obj) - assert empty_list_workspace.to_py() == expected diff --git a/lynxkite-app/tests/test_main.py b/lynxkite-app/tests/test_main.py deleted file mode 100644 index e92076bc102c516a41deb3db1852feb3b4d60339..0000000000000000000000000000000000000000 --- a/lynxkite-app/tests/test_main.py +++ /dev/null @@ -1,57 +0,0 @@ -import pathlib -import uuid -from fastapi.testclient import TestClient -from lynxkite_app.main import app, detect_plugins -from lynxkite.core import ops -import os - - -ops.user_script_root = None -client = TestClient(app) - - -def test_detect_plugins_with_plugins(): - # This test assumes that these plugins are installed as part of the testing process. - plugins = detect_plugins() - assert all( - plugin in plugins.keys() - for plugin in [ - "lynxkite_graph_analytics", - "lynxkite_lynxscribe", - "lynxkite_pillow_example", - ] - ) - - -def test_get_catalog(): - response = client.get("/api/catalog?workspace=test") - assert response.status_code == 200 - - -def test_list_dir(): - test_dir = pathlib.Path() / str(uuid.uuid4()) - test_dir.mkdir(parents=True, exist_ok=True) - dir = test_dir / "test_dir" - dir.mkdir(exist_ok=True) - file = test_dir / "test_file.txt" - file.touch() - ws = test_dir / "test_workspace.lynxkite.json" - ws.touch() - response = client.get(f"/api/dir/list?path={str(test_dir)}") - assert response.status_code == 200 - assert response.json() == [ - {"name": f"{test_dir}/test_dir", "type": "directory"}, - {"name": f"{test_dir}/test_file.txt", "type": "file"}, - {"name": f"{test_dir}/test_workspace.lynxkite.json", "type": "workspace"}, - ] - file.unlink() - ws.unlink() - dir.rmdir() - - -def test_make_dir(): - dir_name = str(uuid.uuid4()) - response = client.post("/api/dir/mkdir", json={"path": dir_name}) - assert response.status_code == 200 - 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"integrity": "sha512-uzgraf4njmmHAbEUxMJ8Oxg+P3fT04O+9p7gY+wJRVxo8Ge+KmYv0WJev945EH4wFuc4OY2NLXz46FZrWS9xJg==", - "license": "BSD-3-Clause", - "dependencies": { - "tslib": "2.3.0" - } - }, - "node_modules/zustand": { - "version": "4.5.5", - "resolved": "https://registry.npmjs.org/zustand/-/zustand-4.5.5.tgz", - "integrity": "sha512-+0PALYNJNgK6hldkgDq2vLrw5f6g/jCInz52n9RTpropGgeAf/ioFUCdtsjCqu4gNhW9D01rUQBROoRjdzyn2Q==", - "license": "MIT", - "dependencies": { - "use-sync-external-store": "1.2.2" - }, - "engines": { - "node": ">=12.7.0" - }, - "peerDependencies": { - "@types/react": ">=16.8", - "immer": ">=9.0.6", - "react": ">=16.8" - }, - "peerDependenciesMeta": { - "@types/react": { - "optional": true - }, - "immer": { - "optional": true - }, - "react": { - "optional": true - } - } - }, - "node_modules/zwitch": { - "version": "2.0.4", - "resolved": "https://registry.npmjs.org/zwitch/-/zwitch-2.0.4.tgz", - "integrity": "sha512-bXE4cR/kVZhKZX/RjPEflHaKVhUVl85noU3v6b8apfQEc1x4A+zBxjZ4lN8LqGd6WZ3dl98pY4o717VFmoPp+A==", - "license": "MIT", - "funding": { - "type": "github", - "url": "https://github.com/sponsors/wooorm" - } - } - } -} diff --git a/lynxkite-app/web/package.json b/lynxkite-app/web/package.json deleted file mode 100644 index ff90f904e872ede1813084162f0c88a55b0d4a8c..0000000000000000000000000000000000000000 --- a/lynxkite-app/web/package.json +++ /dev/null @@ -1,61 +0,0 @@ -{ - "name": "lynxkite", - "private": true, - "version": "0.0.0", - "type": "module", - "scripts": { - "test": "playwright test", - "dev": "npx vite", - "build": "npx tsc -b && npx vite build", - "preview": "npx vite preview" - }, - "dependencies": { - "@esbuild/linux-x64": "^0.25.0", - "@iconify-json/tabler": "^1.2.10", - "@monaco-editor/react": "^4.7.0", - "@svgr/core": "^8.1.0", - "@svgr/plugin-jsx": "^8.1.0", - "@swc/core": "^1.10.1", - "@syncedstore/core": "^0.6.0", - "@syncedstore/react": "^0.6.0", - "@types/node": "^22.10.1", - "@xyflow/react": "^12.6.0", - "3dmol": "^2.4.2", - "axios": "^1.8.2", - "daisyui": "^4.12.20", - "echarts": "^5.5.1", - "fuse.js": "^7.0.0", - "jmespath": "^0.16.0", - "json-schema-to-typescript": "^15.0.3", - "monaco-editor": "^0.52.2", - "react": "^18.3.1", - "react-dom": "^18.3.1", - "react-error-boundary": "^5.0.0", - "react-markdown": "^9.0.1", - "react-router-dom": "^7.5.2", - "react-tooltip": "^5.28.1", - "swr": "^2.2.5", - "unplugin-icons": "^0.21.0", - "y-monaco": "^0.1.6", - "y-websocket": "^2.0.4", - "yjs": "^13.6.20" - }, - "devDependencies": { - "@playwright/test": "^1.50.1", - "@tailwindcss/typography": "^0.5.16", - "@types/jmespath": "^0.15.2", - "@types/node": "^22.13.1", - "@types/react": "^18.3.14", - "@types/react-dom": "^18.3.2", - "@vitejs/plugin-react-swc": "^3.5.0", - "autoprefixer": "^10.4.20", - "globals": "^15.12.0", - "postcss": "^8.4.49", - "tailwindcss": "^3.4.16", - "typescript": "~5.6.2", - "vite": "^6.3.4" - }, - "optionalDependencies": { - "@rollup/rollup-linux-x64-gnu": "^4.28.1" - } -} diff --git a/lynxkite-app/web/playwright.config.ts b/lynxkite-app/web/playwright.config.ts deleted file mode 100644 index eeb6fafe38bd761527a7bd22b2b2f30cb562cf53..0000000000000000000000000000000000000000 --- a/lynxkite-app/web/playwright.config.ts +++ /dev/null @@ -1,30 +0,0 @@ -import { defineConfig, devices } from "@playwright/test"; - -export default defineConfig({ - testDir: "./tests", - timeout: process.env.CI ? 30000 : 10000, - fullyParallel: false, - /* Fail the build on CI if you accidentally left test.only in the source code. */ - forbidOnly: !!process.env.CI, - retries: 0, - maxFailures: 3, - workers: 1, - reporter: process.env.CI ? [["github"], ["html"]] : "html", - use: { - /* Base URL to use in actions like `await page.goto('/')`. */ - baseURL: "http://127.0.0.1:8000", - trace: "on", - testIdAttribute: "data-nodeid", // Useful for easily selecting nodes using getByTestId - }, - projects: [ - { - name: "chromium", - use: { ...devices["Desktop Chrome"] }, - }, - ], - webServer: { - command: "cd ../../examples && LYNXKITE_SUPPRESS_OP_ERRORS=1 lynxkite", - port: 8000, - reuseExistingServer: false, - }, -}); diff --git a/lynxkite-app/web/postcss.config.js b/lynxkite-app/web/postcss.config.js deleted file mode 100644 index 2aa7205d4b402a1bdfbe07110c61df920b370066..0000000000000000000000000000000000000000 --- a/lynxkite-app/web/postcss.config.js +++ /dev/null @@ -1,6 +0,0 @@ -export default { - plugins: { - tailwindcss: {}, - autoprefixer: {}, - }, -}; diff --git a/lynxkite-app/web/src/Code.tsx b/lynxkite-app/web/src/Code.tsx deleted file mode 100644 index 389696b3d7f57ef05b3fae6bdb75076eac9076de..0000000000000000000000000000000000000000 --- a/lynxkite-app/web/src/Code.tsx +++ /dev/null @@ -1,119 +0,0 @@ -// Full-page editor for code files. - -import Editor, { type Monaco } from "@monaco-editor/react"; -import type { editor } from "monaco-editor"; -import { useEffect, useRef } from "react"; -import { Link } from "react-router"; -import { WebsocketProvider } from "y-websocket"; -import * as Y from "yjs"; -// @ts-ignore -import Atom from "~icons/tabler/atom.jsx"; -// @ts-ignore -import Backspace from "~icons/tabler/backspace.jsx"; -// @ts-ignore -import Close from "~icons/tabler/x.jsx"; -import favicon from "./assets/favicon.ico"; -import theme from "./code-theme.ts"; -import { usePath } from "./common.ts"; - -export default function Code() { - const path = usePath().replace(/^[/]code[/]/, ""); - const parentDir = path!.split("/").slice(0, -1).join("/"); - const yDocRef = useRef(); - const wsProviderRef = useRef(); - const monacoBindingRef = useRef(); - const yMonacoRef = useRef(); - const yMonacoLoadingRef = useRef(false); - const editorRef = useRef(); - useEffect(() => { - const loadMonaco = async () => { - if (yMonacoLoadingRef.current) return; - yMonacoLoadingRef.current = true; - // y-monaco is gigantic. The other Monaco packages are small. - yMonacoRef.current = await import("y-monaco"); - initCRDT(); - }; - loadMonaco(); - }, []); - function beforeMount(monaco: Monaco) { - monaco.editor.defineTheme("lynxkite", theme); - } - function onMount(_editor: editor.IStandaloneCodeEditor, monaco: Monaco) { - // Do nothing on Ctrl+S. We save after every keypress anyway. - _editor.addCommand(monaco.KeyMod.CtrlCmd | monaco.KeyCode.KeyS, () => {}); - editorRef.current = _editor; - initCRDT(); - } - function initCRDT() { - if (!yMonacoRef.current || !editorRef.current) return; - if (yDocRef.current) return; - yDocRef.current = new Y.Doc(); - const text = yDocRef.current.getText("text"); - const proto = location.protocol === "https:" ? "wss:" : "ws:"; - const encodedPath = path! - .split("/") - .map((segment) => encodeURIComponent(segment)) - .join("/"); - wsProviderRef.current = new WebsocketProvider( - `${proto}//${location.host}/ws/code/crdt`, - encodedPath!, - yDocRef.current, - ); - editorRef.current.getModel()!.setEOL(0); // https://github.com/yjs/y-monaco/issues/6 - monacoBindingRef.current = new yMonacoRef.current.MonacoBinding( - text, - editorRef.current.getModel()!, - new Set([editorRef.current]), - wsProviderRef.current.awareness, - ); - } - useEffect(() => { - return () => { - yDocRef.current?.destroy(); - wsProviderRef.current?.destroy(); - monacoBindingRef.current?.destroy(); - }; - }); - return ( -
-
- - - -
{path}
- {path} -
- - - encodeURIComponent(segment)) - .join("/")}`} - className="btn btn-link" - > - - -
-
- -
- ); -} diff --git a/lynxkite-app/web/src/Directory.tsx b/lynxkite-app/web/src/Directory.tsx deleted file mode 100644 index 90f7d4963284f1b8136d5b2470397f9873222afc..0000000000000000000000000000000000000000 --- a/lynxkite-app/web/src/Directory.tsx +++ /dev/null @@ -1,243 +0,0 @@ -import { useState } from "react"; -// The directory browser. -import { Link, useNavigate } from "react-router"; -import useSWR from "swr"; -import type { DirectoryEntry } from "./apiTypes.ts"; -import { usePath } from "./common.ts"; - -// @ts-ignore -import File from "~icons/tabler/file"; -// @ts-ignore -import FilePlus from "~icons/tabler/file-plus"; -// @ts-ignore -import Folder from "~icons/tabler/folder"; -// @ts-ignore -import FolderPlus from "~icons/tabler/folder-plus"; -// @ts-ignore -import Home from "~icons/tabler/home"; -// @ts-ignore -import LayoutGrid from "~icons/tabler/layout-grid"; -// @ts-ignore -import LayoutGridAdd from "~icons/tabler/layout-grid-add"; -// @ts-ignore -import Trash from "~icons/tabler/trash"; -import logo from "./assets/logo.png"; - -function EntryCreator(props: { - label: string; - icon: JSX.Element; - onCreate: (name: string) => void; -}) { - const [isCreating, setIsCreating] = useState(false); - const [nameValidationError, setNameValidationError] = useState(""); - - function validateName(name: string): boolean { - if (name.includes("/")) { - setNameValidationError("Name cannot contain '/' characters"); - return false; - } - if (name.trim() === "") { - setNameValidationError("Name cannot be empty"); - return false; - } - setNameValidationError(""); - return true; - } - - return ( - <> - {isCreating ? ( -
{ - e.preventDefault(); - const name = (e.target as HTMLFormElement).entryName.value.trim(); - if (validateName(name)) { - props.onCreate(name); - setIsCreating(false); - } - }} - > - setIsCreating(false)} - onChange={(e) => validateName(e.target.value)} - placeholder={`${props.label} name`} - /> - {nameValidationError && ( -
- - {nameValidationError} -
- )} -
- ) : ( - - )} - - ); -} - -const fetcher = (url: string) => fetch(url).then((res) => res.json()); - -export default function Directory() { - const path = usePath().replace(/^[/]$|^[/]dir$|^[/]dir[/]/, ""); - const encodedPath = encodeURIComponent(path || ""); - const list = useSWR(`/api/dir/list?path=${encodedPath}`, fetcher, { - dedupingInterval: 0, - }); - const navigate = useNavigate(); - - function link(item: DirectoryEntry) { - const encodedName = encodePathSegments(item.name); - if (item.type === "directory") { - return `/dir/${encodedName}`; - } - if (item.type === "workspace") { - return `/edit/${encodedName}`; - } - return `/code/${encodedName}`; - } - - function shortName(item: DirectoryEntry) { - return item.name - .split("/") - .pop() - ?.replace(/[.]lynxkite[.]json$/, ""); - } - - function encodePathSegments(path: string): string { - const segments = path.split("/"); - return segments.map((segment) => encodeURIComponent(segment)).join("/"); - } - - function newWorkspaceIn(path: string, workspaceName: string) { - const pathSlash = path ? `${encodePathSegments(path)}/` : ""; - navigate(`/edit/${pathSlash}${encodeURIComponent(workspaceName)}.lynxkite.json`, { - replace: true, - }); - } - function newCodeFile(path: string, name: string) { - const pathSlash = path ? `${encodePathSegments(path)}/` : ""; - navigate(`/code/${pathSlash}${encodeURIComponent(name)}`, { replace: true }); - } - async function newFolderIn(path: string, folderName: string) { - const pathSlash = path ? `${path}/` : ""; - const res = await fetch("/api/dir/mkdir", { - method: "POST", - headers: { "Content-Type": "application/json" }, - body: JSON.stringify({ path: pathSlash + folderName }), - }); - if (res.ok) { - const pathSlash = path ? `${encodePathSegments(path)}/` : ""; - navigate(`/dir/${pathSlash}${encodeURIComponent(folderName)}`); - } else { - alert("Failed to create folder."); - } - } - - async function deleteItem(item: DirectoryEntry) { - if (!window.confirm(`Are you sure you want to delete "${item.name}"?`)) return; - const apiPath = item.type === "directory" ? "/api/dir/delete" : "/api/delete"; - await fetch(apiPath, { - method: "POST", - headers: { "Content-Type": "application/json" }, - body: JSON.stringify({ path: item.name }), - }); - } - - return ( -
-
- - LynxKite logo - -
The Complete Graph Data Science Platform
-
-
- {list.error &&

{list.error.message}

} - {list.isLoading && ( - - Loading... - - )} - - {list.data && ( - <> -
- { - newWorkspaceIn(path || "", name); - }} - icon={} - label="New workspace" - /> - { - newCodeFile(path || "", name); - }} - icon={} - label="New code file" - /> - { - newFolderIn(path || "", name); - }} - icon={} - label="New folder" - /> -
- - {path ? ( -
- - - {" "} - {path} - {path} -
- ) : ( - LynxKite 2000:MM - )} - - {list.data.map( - (item: DirectoryEntry) => - !shortName(item)?.startsWith("__") && ( -
- - {item.type === "directory" ? ( - - ) : item.type === "workspace" ? ( - - ) : ( - - )} - {shortName(item)} - - -
- ), - )} - - )} -
{" "} -
- ); -} diff --git a/lynxkite-app/web/src/Tooltip.tsx b/lynxkite-app/web/src/Tooltip.tsx deleted file mode 100644 index 07fbbdaac782f0761a2876f8890dca9028308aa6..0000000000000000000000000000000000000000 --- a/lynxkite-app/web/src/Tooltip.tsx +++ /dev/null @@ -1,21 +0,0 @@ -import { useId } from "react"; -import Markdown from "react-markdown"; -import { Tooltip as ReactTooltip } from "react-tooltip"; - -export default function Tooltip(props: any) { - const id = useId(); - if (!props.doc) return null; - return ( - <> - - {props.children} - - - {props.doc.map?.( - (section: any, i: number) => - section.kind === "text" && {section.value}, - ) ?? {props.doc}} - - - ); -} diff --git a/lynxkite-app/web/src/apiTypes.ts b/lynxkite-app/web/src/apiTypes.ts deleted file mode 100644 index 792e5c3571be32a33012389d998131a8354d4043..0000000000000000000000000000000000000000 --- a/lynxkite-app/web/src/apiTypes.ts +++ /dev/null @@ -1,65 +0,0 @@ -/* tslint:disable */ -/* eslint-disable */ -/** -/* This file was automatically generated from pydantic models by running pydantic2ts. -/* Do not modify it by hand - just update the pydantic models and then re-run the script -*/ - -export type NodeStatus = "planned" | "active" | "done"; - -export interface DirectoryEntry { - name: string; - type: string; -} -export interface SaveRequest { - path: string; - ws: Workspace; - [k: string]: unknown; -} -/** - * A workspace is a representation of a computational graph that consists of nodes and edges. - * - * Each node represents an operation or task, and the edges represent the flow of data between - * the nodes. Each workspace is associated with an environment, which determines the operations - * that can be performed in the workspace and the execution method for the operations. - */ -export interface Workspace { - env?: string; - paused?: boolean; - nodes?: WorkspaceNode[]; - edges?: WorkspaceEdge[]; - [k: string]: unknown; -} -export interface WorkspaceNode { - id: string; - type: string; - data: WorkspaceNodeData; - position: Position; - width: number; - height: number; - [k: string]: unknown; -} -export interface WorkspaceNodeData { - title: string; - params: { - [k: string]: unknown; - }; - display?: unknown; - input_metadata?: unknown; - error?: string | null; - status?: NodeStatus; - [k: string]: unknown; -} -export interface Position { - x: number; - y: number; - [k: string]: unknown; -} -export interface WorkspaceEdge { - id: string; - source: string; - target: string; - sourceHandle: string; - targetHandle: string; - [k: string]: unknown; -} diff --git a/lynxkite-app/web/src/assets/favicon.ico b/lynxkite-app/web/src/assets/favicon.ico deleted file mode 100644 index d63db347c4c6262786e0199ee301fa65428d280c..0000000000000000000000000000000000000000 Binary files a/lynxkite-app/web/src/assets/favicon.ico and /dev/null differ diff --git a/lynxkite-app/web/src/assets/logo.png b/lynxkite-app/web/src/assets/logo.png deleted file mode 100644 index 49feea0f896993b3803f59548830720e67da5d41..0000000000000000000000000000000000000000 Binary files a/lynxkite-app/web/src/assets/logo.png and /dev/null differ diff --git a/lynxkite-app/web/src/code-theme.ts b/lynxkite-app/web/src/code-theme.ts deleted file mode 100644 index f87b908baae0b2004a8bf3e9f4b576a817865f5e..0000000000000000000000000000000000000000 --- a/lynxkite-app/web/src/code-theme.ts +++ /dev/null @@ -1,38 +0,0 @@ -// A simple theme using the LynxKite colors. - -import type { editor } from "monaco-editor/esm/vs/editor/editor.api"; - -const theme: editor.IStandaloneThemeData = { - base: "vs-dark", - inherit: true, - rules: [ - { - foreground: "ff8800", - token: "keyword", - }, - { - foreground: "0088ff", - fontStyle: "italic", - token: "comment", - }, - { - foreground: "39bcf3", - token: "string", - }, - { - foreground: "ffc600", - token: "", - }, - ], - colors: { - "editor.foreground": "#FFFFFF", - "editor.background": "#002a4c", - "editor.selectionBackground": "#0050a4", - "editor.lineHighlightBackground": "#1f4662", - "editorCursor.foreground": "#ffc600", - "editorWhitespace.foreground": "#7f7f7fb2", - "editorIndentGuide.background": "#3b5364", - "editorIndentGuide.activeBackground": "#ffc600", - }, -}; -export default theme; diff --git a/lynxkite-app/web/src/common.ts b/lynxkite-app/web/src/common.ts deleted file mode 100644 index 795df75ab663f0aa854abd8cadee9e1a2ab605d6..0000000000000000000000000000000000000000 --- a/lynxkite-app/web/src/common.ts +++ /dev/null @@ -1,16 +0,0 @@ -import { useLocation } from "react-router"; - -export function usePath() { - // Decode special characters. Drop trailing slash. (Some clients add it, e.g. Playwright.) - const path = decodeURIComponent(useLocation().pathname).replace(/[/]$/, ""); - return path; -} - -export const COLORS: { [key: string]: string } = { - gray: "oklch(95% 0 0)", - pink: "oklch(75% 0.2 0)", - orange: "oklch(75% 0.2 55)", - green: "oklch(75% 0.2 150)", - blue: "oklch(75% 0.2 230)", - purple: "oklch(75% 0.2 290)", -}; diff --git a/lynxkite-app/web/src/index.css b/lynxkite-app/web/src/index.css deleted file mode 100644 index bcdb988421503c31ebd132dccc7754c469438703..0000000000000000000000000000000000000000 --- a/lynxkite-app/web/src/index.css +++ /dev/null @@ -1,727 +0,0 @@ -@tailwind base; -@tailwind components; -@tailwind utilities; - -:root { - font-family: Inter, system-ui, Avenir, Helvetica, Arial, sans-serif; - line-height: 1.5; - font-weight: 400; - - font-synthesis: none; - text-rendering: optimizeLegibility; - -webkit-font-smoothing: antialiased; - -moz-osx-font-smoothing: grayscale; - - background: #002a4c; -} - -img, -svg { - display: inline-block; -} - -body { - color: var(--foreground); - background: var(--background); - font-family: Arial, Helvetica, sans-serif; -} - -.workspace { - background: white; - display: flex; - flex-direction: column; - height: 100vh; - - .top-bar { - display: flex; - justify-content: space-between; - align-items: center; - background: #002a4c; - - .ws-name { - font-size: 1.5em; - flex: 1; - color: white; - } - - .logo img { - height: 2em; - vertical-align: middle; - margin: 4px; - } - - .tools { - display: flex; - align-items: center; - - .btn { - color: oklch(75% 0.13 230); - font-size: 1.5em; - padding: 0 10px; - } - } - } - - .error { - background: #ffdddd; - padding: 8px; - font-size: 12px; - } - - .node-container { - padding: 8px; - position: relative; - } - - .lynxkite-node { - box-shadow: 0px 5px 50px 0px rgba(0, 0, 0, 0.3); - border-radius: 4px; - overflow: hidden; - background: white; - display: flex; - flex-direction: column; - - > :not(.title, .react-flow__handle) { - user-select: text; - cursor: default; - } - - .node-content { - flex: 1; - overflow: auto; - display: flex; - flex-direction: column; - } - } - - .in-group .lynxkite-node { - box-shadow: 0px 1px 5px 0px rgba(0, 0, 0, 0.3); - opacity: 0.3; - transition: opacity 0.3s; - } - - .in-group .lynxkite-node:hover { - opacity: 1; - } - - .node-group { - box-shadow: 0px 3px 30px 0px rgba(0, 0, 0, 0.3); - border-radius: 20px; - border: none; - background-color: white; - opacity: 0.9; - display: flex; - flex-direction: column; - align-items: end; - padding: 10px 20px; - } - - .node-group.in-group { - opacity: 0.5; - } - - .node-group-color-picker-icon { - font-size: 30px; - opacity: 0.1; - transition: opacity 0.3s; - } - - .node-group:hover .node-group-color-picker-icon { - opacity: 1; - } - - .color-picker-button { - font-size: 30px; - } - - .tooltip { - padding: 8px; - border-radius: 4px; - opacity: 1; - text-align: left; - background: #fffa; - color: black; - box-shadow: 0px 5px 50px 0px rgba(0, 0, 0, 0.1); - backdrop-filter: blur(10px); - font-size: 16px; - font-weight: initial; - max-width: 300px; - } - - .prose p { - margin-bottom: 0; - } - - .expanded .lynxkite-node { - height: 100%; - } - - .lynxkite-node .title { - font-weight: bold; - padding: 8px; - background-image: linear-gradient( - to right, - var(--status-color-1), - var(--status-color-2) 40%, - var(--status-color-2) 60%, - var(--status-color-3) - ); - background-blend-mode: luminosity; - background-size: 180% 180%; - --status-color-1: #0000; - --status-color-2: #0000; - --status-color-3: #0000; - transition: --status-color-1 0.3s, --status-color-2 0.3s, --status-color-3 0.3s; - display: flex; - flex-direction: row; - gap: 10px; - - .title-title { - flex: 1; - } - } - - .lynxkite-node .title.active { - --status-color-1: #0000; - --status-color-2: #fff4; - --status-color-3: #888f; - animation: active-node-gradient-animation 1.2s alternate ease-in-out infinite; - } - - .lynxkite-node .title.planned { - --status-color-1: #888f; - --status-color-2: #888f; - --status-color-3: #888f; - } - - .handle-name { - font-size: 10px; - color: black; - letter-spacing: 0.05em; - text-align: right; - white-space: nowrap; - position: absolute; - top: -5px; - backdrop-filter: blur(10px); - padding: 2px 8px; - border-radius: 4px; - visibility: hidden; - } - - .react-flow__handle-left { - left: -5px; - - .handle-name { - right: 30px; - } - } - - .react-flow__handle-right { - right: -5px; - - .handle-name { - left: 30px; - } - } - - .react-flow__handle-top { - top: -5px; - - .handle-name { - top: -3px; - left: 13px; - backdrop-filter: none; - } - } - - .react-flow__handle-bottom { - bottom: -5px; - - .handle-name { - top: 0px; - left: 13px; - backdrop-filter: none; - } - } - - .node-container:hover .handle-name { - visibility: visible; - } - - .node-resizer { - position: absolute; - bottom: 8px; - right: 8px; - cursor: nwse-resize; - } - - .lynxkite-node { - .param { - padding: 4px 8px 4px 8px; - display: block; - } - - .param-name-row { - display: flex; - flex-direction: row; - justify-content: space-between; - align-items: end; - } - - .param-name { - display: block; - font-size: 10px; - letter-spacing: 0.05em; - margin-left: 10px; - width: fit-content; - padding: 2px 8px; - border-radius: 4px 4px 0 0; - } - } - - .node-search { - position: fixed; - width: 300px; - z-index: 5; - padding: 4px; - border-radius: 4px; - border: 1px solid #888; - background-color: white; - max-height: -webkit-fill-available; - max-height: -moz-available; - display: flex; - flex-direction: column; - - input { - width: calc(100% - 26px); - font-size: 20px; - padding: 8px; - border-radius: 4px; - border: 1px solid #eee; - margin: 4px; - } - - .search-result { - padding: 4px; - cursor: pointer; - } - - .search-result.selected { - background-color: oklch(75% 0.2 55); - border-radius: 4px; - } - - .matches { - overflow-y: auto; - } - } - - .react-flow__node-table_view { - .df-head { - font-weight: bold; - padding: 8px; - background: #f0f0f0; - cursor: pointer; - } - - dl { - margin: 10px; - } - } - - .react-flow__node-comment { - width: auto !important; - height: auto !important; - max-width: 400px; - - .comment-view { - border-radius: 4px; - padding: 5px 10px; - } - - .comment-editor { - width: 400px; - box-shadow: 0px 5px 20px 0px rgba(0, 0, 0, 0.3); - border-radius: 4px; - padding: 5px 10px; - border: 1px solid #ccc; - overflow-y: hidden; - } - } - - .env-select { - background: transparent; - color: #39bcf3; - } - - .workspace-message { - position: absolute; - left: 50%; - bottom: 20px; - transform: translateX(-50%); - box-shadow: 0 5px 50px 0px #8008; - padding: 10px 40px 10px 20px; - border-radius: 5px; - - .close { - position: absolute; - right: 10px; - cursor: pointer; - } - } - - .model-mapping-param { - border: 1px solid var(--fallback-bc, oklch(var(--bc) / 0.2)); - border-collapse: separate; - border-radius: 5px; - padding: 5px 10px; - width: 100%; - } - - .table-viewer { - td { - padding: 5px 10px; - vertical-align: top; - } - - .image-in-table { - max-height: 100px; - } - - .sort-indicator { - display: inline-block; - width: 0; - font-size: 10px; - color: #0006; - transform: translate(5px, -2px); - } - } -} - -.params-expander { - font-size: 15px; - padding: 4px; - color: #000a; -} - -.flippy { - transition: transform 0.5s; -} - -.flippy.flippy-90 { - transform: rotate(-90deg); -} - -.directory { - .entry-list { - width: 100%; - margin: 10px auto; - background-color: white; - border-radius: 10px; - box-shadow: 0px 2px 4px; - padding: 0 0 10px 0; - } - - @media (min-width: 768px) { - .entry-list { - width: 768px; - } - } - - @media (min-width: 960px) { - .entry-list { - width: 80%; - } - } - - .logo { - margin: 0; - padding-top: 50px; - text-align: center; - } - - .logo-image { - max-width: 50%; - } - - .tagline { - color: #39bcf3; - font-size: 14px; - font-weight: 500; - } - - @media (min-width: 1400px) { - .tagline { - font-size: 18px; - } - } - - .actions { - display: flex; - justify-content: space-evenly; - align-items: center; - height: 50px; - padding: 5px; - - form, - button { - flex: 1; - } - } - - .actions a { - padding: 2px 10px; - border-radius: 5px; - } - - .actions a:hover { - background: #39bcf3; - color: white; - } - - .breadcrumbs { - padding-left: 10px; - font-size: 20px; - background: #002a4c20; - } - - .breadcrumbs a:hover { - color: #39bcf3; - } - - .entry-list .entry { - display: flex; - border-bottom: 1px solid whitesmoke; - color: #004165; - cursor: pointer; - user-select: none; - - a { - text-decoration: none; - flex: 1; - padding-left: 10px; - } - - .entry-name { - padding-left: 10px; - } - - button { - padding-right: 10px; - } - } - - .entry-list .open .entry, - .entry-list .entry:hover, - .entry-list .entry:focus { - background: #39bcf3; - color: white; - } - - .entry-list .entry:last-child { - border-bottom: none; - } - - a { - text-decoration: none; - } - - .loading { - color: #39bcf3; - margin: 10px; - } -} - -@keyframes active-node-gradient-animation { - to { - background-position-x: 100%; - } -} - -@property --status-color-1 { - syntax: ""; - initial-value: red; - inherits: false; -} - -@property --status-color-2 { - syntax: ""; - initial-value: red; - inherits: false; -} - -@property --status-color-3 { - syntax: ""; - initial-value: red; - inherits: false; -} - -.react-flow__edge.selected path.react-flow__edge-path { - outline: var(--xy-selection-border, var(--xy-selection-border-default)); - outline-offset: 10px; - border-radius: 1px; -} - -.react-flow__handle { - border-color: black; - background: white; - width: 20px; - height: 20px; - border-width: 2px; -} - -.react-flow__arrowhead * { - stroke: none; - fill: black; -} - -.react-flow__node-area { - z-index: -10 !important; -} - -.selected .node-group, -.selected .comment-view, -.selected .lynxkite-node { - outline: var(--xy-selection-border, var(--xy-selection-border-default)); - outline-offset: 7.5px; -} - -.selected .node-group { - outline-offset: 20px; -} - -.graph-creation-view { - display: flex; - width: 100%; - margin-top: 10px; -} - -.graph-tables, -.graph-relations { - flex: 1; - padding-left: 10px; - padding-right: 10px; -} - -.graph-table-header { - display: flex; - justify-content: space-between; - font-weight: bold; - text-align: left; - background-color: #333; - color: white; - padding: 10px; - border-bottom: 2px solid #222; - font-size: 16px; -} - -.graph-creation-view .df-head { - font-weight: bold; - display: flex; - justify-content: space-between; - padding: 8px 12px; - /* Adds a separator between rows */ - border-bottom: 1px solid #ccc; -} - -/* Alternating background colors for table-like effect */ -.graph-creation-view .df-head:nth-child(odd) { - background-color: #f9f9f9; -} - -.graph-creation-view .df-head:nth-child(even) { - background-color: #e0e0e0; -} - -.graph-relation-attributes { - display: flex; - flex-direction: column; - /* Adds space between each label-input pair */ - gap: 10px; - width: 100%; -} - -.graph-relation-attributes label { - font-size: 12px; - font-weight: bold; - display: block; - margin-bottom: 2px; - /* Lighter text for labels */ - color: #666; -} - -.graph-relation-attributes input { - width: 100%; - padding: 8px; - font-size: 14px; - border: 1px solid #ccc; - border-radius: 4px; - outline: none; -} - -.graph-relation-attributes input:focus { - /* Highlight input on focus */ - border-color: #007bff; -} - -.add-relationship-button { - background-color: #28a745; - color: white; - border: none; - font-size: 16px; - cursor: pointer; - padding: 4px 10px; - border-radius: 4px; -} - -.add-relationship-button:hover { - background-color: #218838; -} - -.yRemoteSelection { - background-color: rgb(250, 129, 0, 0.5); -} - -.yRemoteSelectionHead { - position: absolute; - border-left: #ff8800 solid 2px; - border-top: #ff8800 solid 2px; - border-bottom: #ff8800 solid 2px; - height: 100%; - box-sizing: border-box; -} - -.yRemoteSelectionHead::after { - position: absolute; - content: " "; - border: 3px solid #ff8800; - border-radius: 4px; - left: -4px; - top: -5px; -} - -.error-message { - display: flex; - align-items: center; - gap: 0.5rem; - margin-top: 0.25rem; - padding: 0.5rem; - background-color: #fee2e2; - border: 1px solid #fecaca; - border-radius: 0.375rem; - color: #dc2626; - font-size: 0.875rem; -} - -.error-icon { - flex-shrink: 0; -} - -.error-text { - line-height: 1.4; -} - -.input-error { - border-color: #dc2626; - box-shadow: 0 0 0 1px #dc2626; -} diff --git a/lynxkite-app/web/src/main.tsx b/lynxkite-app/web/src/main.tsx deleted file mode 100644 index 375d9cf62b18057410c52db2b59fc456b7e2bbb1..0000000000000000000000000000000000000000 --- a/lynxkite-app/web/src/main.tsx +++ /dev/null @@ -1,53 +0,0 @@ -import { StrictMode } from "react"; -import { createRoot } from "react-dom/client"; -import "@xyflow/react/dist/style.css"; -import "./index.css"; -import { - Link, - Route, - RouterProvider, - createBrowserRouter, - createRoutesFromElements, - useRouteError, -} from "react-router"; -import Code from "./Code.tsx"; -import Directory from "./Directory.tsx"; -import Workspace from "./workspace/Workspace.tsx"; - -function WorkspaceError() { - const error = useRouteError(); - const stack = error instanceof Error ? error.stack : null; - return ( -
-
-
-

Something went wrong...

-
{stack || "Unknown error."}
-
- - Close workspace - -
-
-
-
- ); -} - -const router = createBrowserRouter( - createRoutesFromElements( - <> - } /> - } /> - } /> - } errorElement={} /> - } /> - , - ), -); - -createRoot(document.getElementById("root")!).render( - - - , -); diff --git a/lynxkite-app/web/src/vite-env.d.ts b/lynxkite-app/web/src/vite-env.d.ts deleted file mode 100644 index 11f02fe2a0061d6e6e1f271b21da95423b448b32..0000000000000000000000000000000000000000 --- a/lynxkite-app/web/src/vite-env.d.ts +++ /dev/null @@ -1 +0,0 @@ -/// diff --git a/lynxkite-app/web/src/workspace/EnvironmentSelector.tsx b/lynxkite-app/web/src/workspace/EnvironmentSelector.tsx deleted file mode 100644 index bce7de667fe866746239125a5dc33b02a7f62cf3..0000000000000000000000000000000000000000 --- a/lynxkite-app/web/src/workspace/EnvironmentSelector.tsx +++ /dev/null @@ -1,22 +0,0 @@ -export default function EnvironmentSelector(props: { - options: string[]; - value: string; - onChange: (val: string) => void; -}) { - return ( - <> - - - ); -} diff --git a/lynxkite-app/web/src/workspace/LynxKiteEdge.tsx b/lynxkite-app/web/src/workspace/LynxKiteEdge.tsx deleted file mode 100644 index 6b25da4a7e3f7f5a4370be24cbf8c5b89e3bcbd2..0000000000000000000000000000000000000000 --- a/lynxkite-app/web/src/workspace/LynxKiteEdge.tsx +++ /dev/null @@ -1,32 +0,0 @@ -import { BaseEdge, Position } from "@xyflow/react"; - -function addOffset(x: number, y: number, p: Position, offset: number) { - if (p === Position.Top) return `${x},${y - offset}`; - if (p === Position.Bottom) return `${x},${y + offset}`; - if (p === Position.Left) return `${x - offset},${y}`; - return `${x + offset},${y}`; -} - -export default function LynxKiteEdge(props: any) { - const offset = 0.3 * Math.hypot(props.targetX - props.sourceX, props.targetY - props.sourceY); - const s = addOffset(props.sourceX, props.sourceY, props.sourcePosition, 0); - const sc = addOffset(props.sourceX, props.sourceY, props.sourcePosition, offset); - const tc = addOffset(props.targetX, props.targetY, props.targetPosition, offset); - const t = addOffset(props.targetX, props.targetY, props.targetPosition, 0); - const path = `M${s} C${sc} ${tc} ${t}`; - return ( - <> - - - ); -} diff --git a/lynxkite-app/web/src/workspace/LynxKiteState.ts b/lynxkite-app/web/src/workspace/LynxKiteState.ts deleted file mode 100644 index eebc7a3ca7666e7f62e6453b1227d2bd0f5ca25d..0000000000000000000000000000000000000000 --- a/lynxkite-app/web/src/workspace/LynxKiteState.ts +++ /dev/null @@ -1,4 +0,0 @@ -import { createContext } from "react"; -import type { Workspace } from "../apiTypes.ts"; - -export const LynxKiteState = createContext({ workspace: {} as Workspace }); diff --git a/lynxkite-app/web/src/workspace/NodeSearch.tsx b/lynxkite-app/web/src/workspace/NodeSearch.tsx deleted file mode 100644 index a1a9e90195d5623e0e4e3fcde4fcbfed52e1635c..0000000000000000000000000000000000000000 --- a/lynxkite-app/web/src/workspace/NodeSearch.tsx +++ /dev/null @@ -1,93 +0,0 @@ -import Fuse from "fuse.js"; -import { useEffect, useMemo, useRef, useState } from "react"; - -export type OpsOp = { - name: string; - id: string; - categories: string[]; - type: string; - position: { x: number; y: number }; - params: { name: string; default: any }[]; -}; -export type Catalog = { [op: string]: OpsOp }; -export type Catalogs = { [env: string]: Catalog }; - -export default function NodeSearch(props: { - boxes: Catalog; - onCancel: any; - onAdd: any; - pos: { x: number; y: number }; -}) { - const searchBox = useRef(null as unknown as HTMLInputElement); - const [searchText, setSearchText] = useState(""); - const fuse = useMemo( - () => - new Fuse(Object.values(props.boxes), { - keys: ["name"], - }), - [props.boxes], - ); - const allOps = useMemo(() => { - const boxes = Object.values(props.boxes).map((box) => ({ item: box })); - boxes.sort((a, b) => a.item.name.localeCompare(b.item.name)); - return boxes; - }, [props.boxes]); - const hits: { item: OpsOp }[] = searchText ? fuse.search(searchText) : allOps; - const [selectedIndex, setSelectedIndex] = useState(0); - useEffect(() => searchBox.current.focus()); - function typed(text: string) { - setSearchText(text); - setSelectedIndex(Math.max(0, Math.min(selectedIndex, hits.length - 1))); - } - function onKeyDown(e: React.KeyboardEvent) { - if (e.key === "ArrowDown") { - e.preventDefault(); - setSelectedIndex(Math.min(selectedIndex + 1, hits.length - 1)); - } else if (e.key === "ArrowUp") { - e.preventDefault(); - setSelectedIndex(Math.max(selectedIndex - 1, 0)); - } else if (e.key === "Enter") { - addSelected(); - } else if (e.key === "Escape") { - props.onCancel(); - } - } - function addSelected() { - const node = { ...hits[selectedIndex].item }; - node.position = props.pos; - props.onAdd(node); - } - async function lostFocus(e: any) { - // If it's a click on a result, let the click handler handle it. - if (e.relatedTarget?.closest(".node-search")) return; - props.onCancel(); - } - - return ( -
- typed(event.target.value)} - onKeyDown={onKeyDown} - onBlur={lostFocus} - placeholder="Search for box" - /> -
- {hits.map((box, index) => ( -
setSelectedIndex(index)} - onMouseEnter={() => setSelectedIndex(index)} - onClick={addSelected} - className={`search-result ${index === selectedIndex ? "selected" : ""}`} - > - {box.item.categories.map((category) => `${category}\u00A0›\u00A0`)} - {box.item.name} -
- ))} -
-
- ); -} diff --git a/lynxkite-app/web/src/workspace/Workspace.tsx b/lynxkite-app/web/src/workspace/Workspace.tsx deleted file mode 100644 index 69359f3ac9e49b7ce7feb6065a661c7f8e2775c6..0000000000000000000000000000000000000000 --- a/lynxkite-app/web/src/workspace/Workspace.tsx +++ /dev/null @@ -1,655 +0,0 @@ -// The LynxKite workspace editor. - -import { getYjsDoc, syncedStore } from "@syncedstore/core"; -import { - type Connection, - Controls, - type Edge, - MarkerType, - type Node, - ReactFlow, - ReactFlowProvider, - type XYPosition, - applyEdgeChanges, - applyNodeChanges, - useReactFlow, - useUpdateNodeInternals, -} from "@xyflow/react"; -import axios from "axios"; -import { type MouseEvent, useCallback, useEffect, useMemo, useRef, useState } from "react"; -import { Link } from "react-router"; -import useSWR, { type Fetcher } from "swr"; -import { WebsocketProvider } from "y-websocket"; -// @ts-ignore -import Atom from "~icons/tabler/atom.jsx"; -// @ts-ignore -import Backspace from "~icons/tabler/backspace.jsx"; -// @ts-ignore -import UngroupIcon from "~icons/tabler/library-minus.jsx"; -// @ts-ignore -import GroupIcon from "~icons/tabler/library-plus.jsx"; -// @ts-ignore -import Pause from "~icons/tabler/player-pause.jsx"; -// @ts-ignore -import Play from "~icons/tabler/player-play.jsx"; -// @ts-ignore -import Restart from "~icons/tabler/rotate-clockwise.jsx"; -// @ts-ignore -import Close from "~icons/tabler/x.jsx"; -import Tooltip from "../Tooltip.tsx"; -import type { WorkspaceNode, Workspace as WorkspaceType } from "../apiTypes.ts"; -import favicon from "../assets/favicon.ico"; -import { usePath } from "../common.ts"; -// import NodeWithTableView from './NodeWithTableView'; -import EnvironmentSelector from "./EnvironmentSelector"; -import LynxKiteEdge from "./LynxKiteEdge.tsx"; -import { LynxKiteState } from "./LynxKiteState"; -import NodeSearch, { type OpsOp, type Catalog, type Catalogs } from "./NodeSearch.tsx"; -import NodeWithGraphCreationView from "./nodes/GraphCreationNode.tsx"; -import Group from "./nodes/Group.tsx"; -import NodeWithComment from "./nodes/NodeWithComment.tsx"; -import NodeWithImage from "./nodes/NodeWithImage.tsx"; -import NodeWithMolecule from "./nodes/NodeWithMolecule.tsx"; -import NodeWithParams from "./nodes/NodeWithParams"; -import NodeWithTableView from "./nodes/NodeWithTableView.tsx"; -import NodeWithVisualization from "./nodes/NodeWithVisualization.tsx"; - -export default function Workspace(props: any) { - return ( - - - - ); -} - -function LynxKiteFlow() { - const updateNodeInternals = useUpdateNodeInternals(); - const reactFlow = useReactFlow(); - const reactFlowContainer = useRef(null); - const [nodes, setNodes] = useState([] as Node[]); - const [edges, setEdges] = useState([] as Edge[]); - const path = usePath().replace(/^[/]edit[/]/, ""); - const shortPath = path! - .split("/") - .pop()! - .replace(/[.]lynxkite[.]json$/, ""); - const [state, setState] = useState({ workspace: {} as WorkspaceType }); - const [message, setMessage] = useState(null as string | null); - const [pausedUIState, setPausedUIState] = useState(false); - useEffect(() => { - const state = syncedStore({ workspace: {} as WorkspaceType }); - setState(state); - const doc = getYjsDoc(state); - const proto = location.protocol === "https:" ? "wss:" : "ws:"; - const encodedPath = path! - .split("/") - .map((segment) => encodeURIComponent(segment)) - .join("/"); - const wsProvider = new WebsocketProvider( - `${proto}//${location.host}/ws/crdt`, - encodedPath, - doc, - ); - if (state.workspace && typeof state.workspace.paused === "undefined") { - state.workspace.paused = false; - } - const onChange = (_update: any, origin: any, _doc: any, _tr: any) => { - if (origin === wsProvider) { - // An update from the CRDT. Apply it to the local state. - // This is only necessary because ReactFlow keeps secret internal copies of our stuff. - if (!state.workspace) return; - if (!state.workspace.nodes) return; - if (!state.workspace.edges) return; - for (const n of state.workspace.nodes) { - if (n.type !== "node_group" && n.dragHandle !== ".drag-handle") { - n.dragHandle = ".drag-handle"; - } - } - const nodes = reactFlow.getNodes(); - const selection = nodes.filter((n) => n.selected).map((n) => n.id); - const newNodes = state.workspace.nodes.map((n) => - selection.includes(n.id) ? { ...n, selected: true } : n, - ); - setNodes([...newNodes] as Node[]); - setEdges([...state.workspace.edges] as Edge[]); - for (const node of state.workspace.nodes) { - // Make sure the internal copies are updated. - updateNodeInternals(node.id); - } - setPausedUIState(state.workspace.paused || false); - } - }; - doc.on("update", onChange); - return () => { - doc.destroy(); - wsProvider.destroy(); - }; - }, [path, updateNodeInternals]); - - const onNodesChange = useCallback( - (changes: any[]) => { - // An update from the UI. Apply it to the local state... - setNodes((nds) => applyNodeChanges(changes, nds)); - // ...and to the CRDT state. (Which could be the same, except for ReactFlow's internal copies.) - const wnodes = state.workspace?.nodes; - if (!wnodes) return; - for (const ch of changes) { - const nodeIndex = wnodes.findIndex((n) => n.id === ch.id); - if (nodeIndex === -1) continue; - const node = wnodes[nodeIndex]; - if (!node) continue; - // Position events sometimes come with NaN values. Ignore them. - if ( - ch.type === "position" && - !Number.isNaN(ch.position.x) && - !Number.isNaN(ch.position.y) - ) { - getYjsDoc(state).transact(() => { - node.position.x = ch.position.x; - node.position.y = ch.position.y; - }); - // Update edge positions. - updateNodeInternals(ch.id); - } else if (ch.type === "select") { - } else if (ch.type === "dimensions") { - getYjsDoc(state).transact(() => { - node.width = ch.dimensions.width; - node.height = ch.dimensions.height; - }); - // Update edge positions when node size changes. - updateNodeInternals(ch.id); - } else if (ch.type === "remove") { - wnodes.splice(nodeIndex, 1); - } else if (ch.type === "replace") { - // Ideally we would only update the parameter that changed. But ReactFlow does not give us that detail. - getYjsDoc(state).transact(() => { - if (node.data.collapsed !== ch.item.data.collapsed) { - node.data.collapsed = ch.item.data.collapsed; - // Update edge positions when node collapses/expands. - setTimeout(() => updateNodeInternals(ch.id), 0); - } - if (node.data.__execution_delay !== ch.item.data.__execution_delay) { - node.data.__execution_delay = ch.item.data.__execution_delay; - } - for (const [key, value] of Object.entries(ch.item.data.params)) { - if (node.data.params[key] !== value) { - node.data.params[key] = value; - } - } - }); - } else { - console.log("Unknown node change", ch); - } - } - }, - [state, updateNodeInternals], - ); - const onEdgesChange = useCallback( - (changes: any[]) => { - setEdges((eds) => applyEdgeChanges(changes, eds)); - const wedges = state.workspace?.edges; - if (!wedges) return; - for (const ch of changes) { - const edgeIndex = wedges.findIndex((e) => e.id === ch.id); - if (ch.type === "remove") { - wedges.splice(edgeIndex, 1); - } else if (ch.type === "select") { - } else { - console.log("Unknown edge change", ch); - } - } - }, - [state], - ); - - const fetcher: Fetcher = (resource: string, init?: RequestInit) => - fetch(resource, init).then((res) => res.json()); - const encodedPathForAPI = path! - .split("/") - .map((segment) => encodeURIComponent(segment)) - .join("/"); - const catalog = useSWR(`/api/catalog?workspace=${encodedPathForAPI}`, fetcher); - const [suppressSearchUntil, setSuppressSearchUntil] = useState(0); - const [nodeSearchSettings, setNodeSearchSettings] = useState( - undefined as - | { - pos: XYPosition; - boxes: Catalog; - } - | undefined, - ); - const nodeTypes = useMemo( - () => ({ - basic: NodeWithParams, - visualization: NodeWithVisualization, - image: NodeWithImage, - table_view: NodeWithTableView, - graph_creation_view: NodeWithGraphCreationView, - molecule: NodeWithMolecule, - comment: NodeWithComment, - node_group: Group, - }), - [], - ); - const edgeTypes = useMemo( - () => ({ - default: LynxKiteEdge, - }), - [], - ); - - // Global keyboard shortcuts. - useEffect(() => { - const handleKeyDown = (event: KeyboardEvent) => { - // Show the node search dialog on "/". - if (nodeSearchSettings || isTypingInFormElement()) return; - if (event.key === "/") { - event.preventDefault(); - setNodeSearchSettings({ - pos: getBestPosition(), - boxes: catalog.data![state.workspace.env!], - }); - } else if (event.key === "r") { - event.preventDefault(); - executeWorkspace(); - } - }; - // TODO: Switch to keydown once https://github.com/xyflow/xyflow/pull/5055 is merged. - document.addEventListener("keyup", handleKeyDown); - return () => { - document.removeEventListener("keyup", handleKeyDown); - }; - }, [catalog.data, nodeSearchSettings, state.workspace.env]); - - function getBestPosition() { - const W = reactFlowContainer.current!.clientWidth; - const H = reactFlowContainer.current!.clientHeight; - const w = 200; - const h = 200; - const SPEED = 20; - const GAP = 50; - const pos = { x: 100, y: 100 }; - while (pos.y < H) { - // Find a position that is not occupied by a node. - const fpos = reactFlow.screenToFlowPosition(pos); - const occupied = state.workspace.nodes!.some((n) => { - const np = n.position; - return ( - np.x < fpos.x + w + GAP && - np.x + n.width + GAP > fpos.x && - np.y < fpos.y + h + GAP && - np.y + n.height + GAP > fpos.y - ); - }); - if (!occupied) { - return pos; - } - // Move the position to the right and down until we find a free spot. - pos.x += SPEED; - if (pos.x + w > W) { - pos.x = 100; - pos.y += SPEED; - } - } - return { x: 100, y: 100 }; - } - - function isTypingInFormElement() { - const activeElement = document.activeElement; - return ( - activeElement && - (activeElement.tagName === "INPUT" || - activeElement.tagName === "TEXTAREA" || - (activeElement as HTMLElement).isContentEditable) - ); - } - - const closeNodeSearch = useCallback(() => { - setNodeSearchSettings(undefined); - setSuppressSearchUntil(Date.now() + 200); - }, []); - const toggleNodeSearch = useCallback( - (event: MouseEvent) => { - if (suppressSearchUntil > Date.now()) return; - if (nodeSearchSettings) { - closeNodeSearch(); - return; - } - event.preventDefault(); - setNodeSearchSettings({ - pos: { x: event.clientX, y: event.clientY }, - boxes: catalog.data![state.workspace.env!], - }); - }, - [catalog, state, nodeSearchSettings, suppressSearchUntil, closeNodeSearch], - ); - function findFreeId(prefix: string) { - let i = 1; - let id = `${prefix} ${i}`; - const used = new Set(state.workspace.nodes!.map((n) => n.id)); - while (used.has(id)) { - i += 1; - id = `${prefix} ${i}`; - } - return id; - } - function addNode(node: Partial) { - state.workspace.nodes!.push(node as WorkspaceNode); - setNodes([...nodes, node as WorkspaceNode]); - } - function nodeFromMeta(meta: OpsOp): Partial { - const node: Partial = { - type: meta.type, - data: { - meta: { value: meta }, - title: meta.name, - op_id: meta.id, - params: Object.fromEntries(meta.params.map((p) => [p.name, p.default])), - }, - }; - return node; - } - const addNodeFromSearch = useCallback( - (meta: OpsOp) => { - const node = nodeFromMeta(meta); - const nss = nodeSearchSettings!; - node.position = reactFlow.screenToFlowPosition({ - x: nss.pos.x, - y: nss.pos.y, - }); - node.id = findFreeId(node.data!.title); - addNode(node); - closeNodeSearch(); - }, - [nodeSearchSettings, state, reactFlow, nodes, closeNodeSearch], - ); - - const onConnect = useCallback( - (connection: Connection) => { - setSuppressSearchUntil(Date.now() + 200); - const edge = { - id: `${connection.source} ${connection.sourceHandle} ${connection.target} ${connection.targetHandle}`, - source: connection.source, - sourceHandle: connection.sourceHandle!, - target: connection.target, - targetHandle: connection.targetHandle!, - }; - state.workspace.edges!.push(edge); - setEdges((oldEdges) => [...oldEdges, edge]); - }, - [state], - ); - const parentDir = path!.split("/").slice(0, -1).join("/"); - function onDragOver(e: React.DragEvent) { - e.stopPropagation(); - e.preventDefault(); - } - async function onDrop(e: React.DragEvent) { - e.stopPropagation(); - e.preventDefault(); - const file = e.dataTransfer.files[0]; - const formData = new FormData(); - formData.append("file", file); - try { - await axios.post("/api/upload", formData, { - onUploadProgress: (progressEvent) => { - const percentCompleted = Math.round((100 * progressEvent.loaded) / progressEvent.total!); - if (percentCompleted === 100) setMessage("Processing file..."); - else setMessage(`Uploading ${percentCompleted}%`); - }, - }); - setMessage(null); - const cat = catalog.data![state.workspace.env!]; - const node = nodeFromMeta(cat["Import file"]); - node.id = findFreeId(node.data!.title); - node.position = reactFlow.screenToFlowPosition({ - x: e.clientX, - y: e.clientY, - }); - node.data!.params.file_path = `uploads/${file.name}`; - if (file.name.includes(".csv")) { - node.data!.params.file_format = "csv"; - } else if (file.name.includes(".parquet")) { - node.data!.params.file_format = "parquet"; - } else if (file.name.includes(".json")) { - node.data!.params.file_format = "json"; - } else if (file.name.includes(".xls")) { - node.data!.params.file_format = "excel"; - } - addNode(node); - } catch (error) { - setMessage("File upload failed."); - } - } - async function executeWorkspace() { - const response = await axios.post(`/api/execute_workspace?name=${encodeURIComponent(path)}`); - if (response.status !== 200) { - setMessage("Workspace execution failed."); - } - } - function togglePause() { - state.workspace.paused = !state.workspace.paused; - setPausedUIState(state.workspace.paused); - } - function deleteSelection() { - const selectedNodes = nodes.filter((n) => n.selected); - const selectedEdges = edges.filter((e) => e.selected); - reactFlow.deleteElements({ nodes: selectedNodes, edges: selectedEdges }); - } - function groupSelection() { - const selectedNodes = nodes.filter((n) => n.selected && !n.parentId); - const groupNode = { - id: findFreeId("Group"), - type: "node_group", - position: { x: 0, y: 0 }, - width: 0, - height: 0, - data: { title: "Group", params: {} }, - }; - let top = Number.POSITIVE_INFINITY; - let left = Number.POSITIVE_INFINITY; - let bottom = Number.NEGATIVE_INFINITY; - let right = Number.NEGATIVE_INFINITY; - const PAD = 10; - for (const node of selectedNodes) { - if (node.position.y - PAD < top) top = node.position.y - PAD; - if (node.position.x - PAD < left) left = node.position.x - PAD; - if (node.position.y + PAD + node.height! > bottom) - bottom = node.position.y + PAD + node.height!; - if (node.position.x + PAD + node.width! > right) right = node.position.x + PAD + node.width!; - } - groupNode.position = { - x: left, - y: top, - }; - groupNode.width = right - left; - groupNode.height = bottom - top; - setNodes([ - { ...(groupNode as WorkspaceNode), selected: true }, - ...nodes.map((n) => - n.selected - ? { - ...n, - position: { x: n.position.x - left, y: n.position.y - top }, - parentId: groupNode.id, - extent: "parent" as const, - selected: false, - } - : n, - ), - ]); - getYjsDoc(state).transact(() => { - state.workspace.nodes!.unshift(groupNode as WorkspaceNode); - const selectedNodeIds = new Set(selectedNodes.map((n) => n.id)); - for (const node of state.workspace.nodes!) { - if (selectedNodeIds.has(node.id)) { - node.position.x -= left; - node.position.y -= top; - node.parentId = groupNode.id; - node.extent = "parent"; - node.selected = false; - } - } - }); - } - function ungroupSelection() { - const groups = Object.fromEntries( - nodes - .filter((n) => n.selected && n.type === "node_group" && !n.parentId) - .map((n) => [n.id, n]), - ); - setNodes( - nodes - .filter((n) => !groups[n.id]) - .map((n) => { - const g = groups[n.parentId!]; - if (!g) return n; - return { - ...n, - position: { x: n.position.x + g.position.x, y: n.position.y + g.position.y }, - parentId: undefined, - extent: undefined, - selected: true, - }; - }), - ); - getYjsDoc(state).transact(() => { - const wnodes = state.workspace.nodes!; - for (const node of state.workspace.nodes!) { - const g = groups[node.parentId as string]; - if (!g) continue; - node.position.x += g.position.x; - node.position.y += g.position.y; - node.parentId = undefined; - node.extent = undefined; - } - for (const groupId in groups) { - const groupIdx = wnodes.findIndex((n) => n.id === groupId); - wnodes.splice(groupIdx, 1); - } - }); - } - const areMultipleNodesSelected = nodes.filter((n) => n.selected).length > 1; - const isAnyGroupSelected = nodes.some((n) => n.selected && n.type === "node_group"); - return ( -
-
- - - -
{shortPath}
- {shortPath} - { - state.workspace.env = env; - }} - /> -
- {areMultipleNodesSelected && ( - - - - )} - {isAnyGroupSelected && ( - - - - )} - - - - - - - - - - - encodeURIComponent(segment)) - .join("/")}`} - aria-label="close" - > - - - -
-
-
- - - - {nodeSearchSettings && ( - - )} - - - {message && ( -
- setMessage(null)}> - - - {message} -
- )} -
-
- ); -} diff --git a/lynxkite-app/web/src/workspace/nodes/GraphCreationNode.tsx b/lynxkite-app/web/src/workspace/nodes/GraphCreationNode.tsx deleted file mode 100644 index 7c7dc65bb576618fd0cbc81dc7d9a5762085b4c2..0000000000000000000000000000000000000000 --- a/lynxkite-app/web/src/workspace/nodes/GraphCreationNode.tsx +++ /dev/null @@ -1,296 +0,0 @@ -import { useReactFlow } from "@xyflow/react"; -import { useState } from "react"; -import React from "react"; -import Markdown from "react-markdown"; -// @ts-ignore -import Trash from "~icons/tabler/trash"; -import LynxKiteNode from "./LynxKiteNode"; -import Table from "./Table"; - -function toMD(v: any): string { - if (typeof v === "string") { - return v; - } - if (Array.isArray(v)) { - return v.map(toMD).join("\n\n"); - } - return JSON.stringify(v); -} - -function displayTable(name: string, df: any) { - if (df.data.length > 1) { - return ( - - ); - } - if (df.data.length) { - return ( -
- {df.columns.map((c: string, i: number) => ( - -
{c}
-
- {toMD(df.data[0][i])} -
-
- ))} -
- ); - } - return JSON.stringify(df.data); -} - -function relationsToDict(relations: any[]) { - if (!relations) { - return {}; - } - return Object.assign({}, ...relations.map((r: any) => ({ [r.name]: r }))); -} - -export type UpdateOptions = { delay?: number }; - -function NodeWithGraphCreationView(props: any) { - const reactFlow = useReactFlow(); - const [open, setOpen] = useState({} as { [name: string]: boolean }); - const display = props.data.display?.value; - const tables = display?.dataframes || {}; - const singleTable = tables && Object.keys(tables).length === 1; - const [relations, setRelations] = useState(relationsToDict(display?.relations) || {}); - const singleRelation = relations && Object.keys(relations).length === 1; - function setParam(name: string, newValue: any, opts: UpdateOptions) { - reactFlow.updateNodeData(props.id, { - params: { ...props.data.params, [name]: newValue }, - __execution_delay: opts.delay || 0, - }); - } - - function updateRelation(event: any, relation: any) { - event.preventDefault(); - - const updatedRelation = { - ...relation, - ...Object.fromEntries(new FormData(event.target).entries()), - }; - - // Avoid mutating React state directly - const newRelations = { ...relations }; - if (relation.name !== updatedRelation.name) { - delete newRelations[relation.name]; - } - newRelations[updatedRelation.name] = updatedRelation; - setRelations(newRelations); - // There is some issue with how Yjs handles complex objects (maps, arrays) - // so we need to serialize the relations object to a string - setParam("relations", JSON.stringify(newRelations), {}); - } - - const addRelation = () => { - const new_relation = { - name: "new_relation", - df: "", - source_column: "", - target_column: "", - source_table: "", - target_table: "", - source_key: "", - target_key: "", - }; - setRelations({ - ...relations, - [new_relation.name]: new_relation, - }); - setOpen({ ...open, [new_relation.name]: true }); - }; - - const deleteRelation = (relation: any) => { - const newOpen = { ...open }; - delete newOpen[relation.name]; - setOpen(newOpen); - const newRelations = { ...relations }; - delete newRelations[relation.name]; - setRelations(newRelations); - // There is some issue with how Yjs handles complex objects (maps, arrays) - // so we need to serialize the relations object to a string - setParam("relations", JSON.stringify(newRelations), {}); - }; - - function displayRelation(relation: any) { - // TODO: Dynamic autocomplete - return ( - { - updateRelation(e, relation); - }} - > - - - - - - - - - - - - - - - - - - - - - - - - - - {Object.keys(tables).map((name) => ( - - - - {tables[relation.source_table] && - tables[relation.df].columns.map((name: string) => - - - {tables[relation.source_table] && - tables[relation.source_table].columns.map((name: string) => ( - - - - {tables[relation.source_table] && - tables[relation.target_table].columns.map((name: string) => ( - - - - - ); - } - - return ( -
-
-
Node Tables
- {display && [ - Object.entries(tables).map(([name, df]: [string, any]) => ( - - {!singleTable && ( -
setOpen({ ...open, [name]: !open[name] })} - > - {name} -
- )} - {(singleTable || open[name]) && displayTable(name, df)} -
- )), - Object.entries(display.others || {}).map(([name, o]) => ( - <> -
setOpen({ ...open, [name]: !open[name] })} - > - {name} -
- {open[name] &&
{(o as any).toString()}
} - - )), - ]} -
-
-
- Relationships - -
- {relations && - Object.entries(relations).map(([name, relation]: [string, any]) => ( - -
setOpen({ ...open, [name]: !open[name] })} - > - {name} - -
- {(singleRelation || open[name]) && displayRelation(relation)} -
- ))} -
-
- ); -} - -export default LynxKiteNode(NodeWithGraphCreationView); diff --git a/lynxkite-app/web/src/workspace/nodes/Group.tsx b/lynxkite-app/web/src/workspace/nodes/Group.tsx deleted file mode 100644 index 092c760c344ba61617b1abcfc57e78fae76d3b17..0000000000000000000000000000000000000000 --- a/lynxkite-app/web/src/workspace/nodes/Group.tsx +++ /dev/null @@ -1,64 +0,0 @@ -import { useReactFlow } from "@xyflow/react"; -import { useState } from "react"; -// @ts-ignore -import Palette from "~icons/tabler/palette-filled.jsx"; -// @ts-ignore -import Square from "~icons/tabler/square-filled.jsx"; -import Tooltip from "../../Tooltip.tsx"; -import { COLORS } from "../../common.ts"; - -export default function Group(props: any) { - const reactFlow = useReactFlow(); - const [displayingColorPicker, setDisplayingColorPicker] = useState(false); - function setColor(newValue: string) { - reactFlow.updateNodeData(props.id, (prevData: any) => ({ - ...prevData, - params: { color: newValue }, - })); - setDisplayingColorPicker(false); - } - function toggleColorPicker(e: React.MouseEvent) { - e.stopPropagation(); - setDisplayingColorPicker(!displayingColorPicker); - } - const currentColor = props.data?.params?.color || "gray"; - return ( -
- - {displayingColorPicker && } -
- ); -} - -function ColorPicker(props: { currentColor: string; onPick: (color: string) => void }) { - const colors = Object.keys(COLORS).filter((color) => color !== props.currentColor); - return ( -
- {colors.map((color) => ( - - ))} -
- ); -} diff --git a/lynxkite-app/web/src/workspace/nodes/LynxKiteNode.tsx b/lynxkite-app/web/src/workspace/nodes/LynxKiteNode.tsx deleted file mode 100644 index a11daf832a60c64d49ca27fd8b18b8e925733edd..0000000000000000000000000000000000000000 --- a/lynxkite-app/web/src/workspace/nodes/LynxKiteNode.tsx +++ /dev/null @@ -1,209 +0,0 @@ -import { Handle, NodeResizeControl, type Position, useReactFlow } from "@xyflow/react"; -import React from "react"; -import { ErrorBoundary } from "react-error-boundary"; -// @ts-ignore -import AlertTriangle from "~icons/tabler/alert-triangle-filled.jsx"; -// @ts-ignore -import ChevronDownRight from "~icons/tabler/chevron-down-right.jsx"; -// @ts-ignore -import Dots from "~icons/tabler/dots.jsx"; -// @ts-ignore -import Help from "~icons/tabler/question-mark.jsx"; -// @ts-ignore -import Skull from "~icons/tabler/skull.jsx"; -import Tooltip from "../../Tooltip"; -import { COLORS } from "../../common.ts"; - -interface LynxKiteNodeProps { - id: string; - width: number; - height: number; - nodeStyle: any; - data: any; - children: any; - parentId?: string; -} - -function getHandles(inputs: any[], outputs: any[]) { - const handles: { - position: "top" | "bottom" | "left" | "right"; - name: string; - index: number; - offsetPercentage: number; - showLabel: boolean; - type: "source" | "target"; - }[] = []; - for (const e of inputs) { - handles.push({ ...e, type: "target" }); - } - for (const e of outputs) { - handles.push({ ...e, type: "source" }); - } - const counts = { top: 0, bottom: 0, left: 0, right: 0 }; - for (const e of handles) { - e.index = counts[e.position]; - counts[e.position]++; - } - const simpleHorizontal = - counts.top === 0 && counts.bottom === 0 && counts.left <= 1 && counts.right <= 1; - const simpleVertical = - counts.left === 0 && counts.right === 0 && counts.top <= 1 && counts.bottom <= 1; - for (const e of handles) { - e.offsetPercentage = (100 * (e.index + 1)) / (counts[e.position] + 1); - e.showLabel = !simpleHorizontal && !simpleVertical; - } - return handles; -} - -function canScrollX(element: HTMLElement) { - const style = getComputedStyle(element); - return style.overflowX === "auto" || style.overflow === "auto"; -} -function canScrollY(element: HTMLElement) { - const style = getComputedStyle(element); - return style.overflowY === "auto" || style.overflow === "auto"; -} -function canScrollUp(e: HTMLElement) { - return canScrollY(e) && e.scrollTop > 0; -} -function canScrollDown(e: HTMLElement) { - return canScrollY(e) && e.scrollTop < e.scrollHeight - e.clientHeight - 1; -} -function canScrollLeft(e: HTMLElement) { - return canScrollX(e) && e.scrollLeft > 0; -} -function canScrollRight(e: HTMLElement) { - return canScrollX(e) && e.scrollLeft < e.scrollWidth - e.clientWidth - 1; -} - -function onWheel(e: WheelEvent) { - if (e.ctrlKey) return; // Zoom, not scroll. - let t = e.target as HTMLElement; - // If we find an element inside the node container that can apply this scroll event, we stop propagation. - // Otherwise ReactFlow can have it and pan the workspace. - while (t && !t.classList.contains("node-container")) { - if ( - (e.deltaX < 0 && canScrollLeft(t)) || - (e.deltaX > 0 && canScrollRight(t)) || - (e.deltaY < 0 && canScrollUp(t)) || - (e.deltaY > 0 && canScrollDown(t)) - ) { - e.stopPropagation(); - return; - } - t = t.parentElement as HTMLElement; - } -} - -function LynxKiteNodeComponent(props: LynxKiteNodeProps) { - const reactFlow = useReactFlow(); - const containerRef = React.useRef(null); - const data = props.data; - const expanded = !data.collapsed; - const handles = getHandles(data.meta?.value?.inputs || [], data.meta?.value?.outputs || []); - React.useEffect(() => { - // ReactFlow handles wheel events to zoom/pan and this would prevent scrolling inside the node. - // To stop the event from reaching ReactFlow, we stop propagation on the wheel event. - // This must be done with a "passive: false" listener, which we can only register like this. - containerRef.current?.addEventListener("wheel", onWheel, { - passive: false, - }); - return () => { - containerRef.current?.removeEventListener("wheel", onWheel); - }; - }, [containerRef]); - function titleClicked() { - reactFlow.updateNodeData(props.id, { collapsed: expanded }); - } - const handleOffsetDirection = { - top: "left", - bottom: "left", - left: "top", - right: "top", - }; - const titleStyle: { backgroundColor?: string } = {}; - if (data.meta?.value?.color) { - titleStyle.backgroundColor = COLORS[data.meta.value.color] || data.meta.value.color; - } - return ( -
-
-
- {data.title} - {data.error && ( - - - - )} - {expanded || ( - - - - )} - - - -
- {expanded && ( - <> - {data.error &&
{data.error}
} - - - Failed to display this node. -

- } - > -
{props.children}
-
- - - - - )} - {handles.map((handle) => ( - - {handle.showLabel && ( - {handle.name.replace(/_/g, " ")} - )} - - ))} -
-
- ); -} - -export default function LynxKiteNode(Component: React.ComponentType) { - return (props: any) => { - return ( - - - - ); - }; -} diff --git a/lynxkite-app/web/src/workspace/nodes/ModelMappingParameter.tsx b/lynxkite-app/web/src/workspace/nodes/ModelMappingParameter.tsx deleted file mode 100644 index b6da3fec1b437c8e910c3d5e5ec6197dc0786a71..0000000000000000000000000000000000000000 --- a/lynxkite-app/web/src/workspace/nodes/ModelMappingParameter.tsx +++ /dev/null @@ -1,169 +0,0 @@ -import { useRef } from "react"; -// @ts-ignore -import ArrowsHorizontal from "~icons/tabler/arrows-horizontal.jsx"; -// @ts-ignore -import Help from "~icons/tabler/question-mark.jsx"; -import ParameterInput from "./ParameterInput"; - -type Bindings = { - [key: string]: { - df: string; - column: string; - }; -}; - -type NamedId = { - name: string; - id: string; -}; - -function getModelBindings( - data: any, - variant: "training input" | "inference input" | "output", -): NamedId[] { - function bindingsOfModel(m: any): string[] { - switch (variant) { - case "training input": - return [ - ...m.model_inputs, - ...m.loss_inputs.filter((i: string) => !m.model_outputs.includes(i)), - ]; - case "inference input": - return m.model_inputs; - case "output": - return m.model_outputs; - } - } - const bindings = new Set(); - const inputs = data?.input_metadata?.value ?? data?.input_metadata ?? []; - for (const input of inputs) { - const other = input.other ?? {}; - for (const e of Object.values(other) as any[]) { - if (e.type === "model") { - for (const id of bindingsOfModel(e.model)) { - bindings.add({ id, name: e.model.input_output_names[id] ?? id }); - } - } - } - } - const list = [...bindings]; - list.sort((a, b) => { - if (a.name < b.name) return -1; - if (a.name > b.name) return 1; - return 0; - }); - return list; -} - -function parseJsonOrEmpty(json: string): object { - try { - const j = JSON.parse(json); - if (j !== null && typeof j === "object") { - return j; - } - } catch (e) {} - return {}; -} - -export default function ModelMapping({ value, onChange, data, variant }: any) { - const dfsRef = useRef({} as { [binding: string]: HTMLSelectElement | null }); - const columnsRef = useRef( - {} as { [binding: string]: HTMLSelectElement | HTMLInputElement | null }, - ); - const v: any = parseJsonOrEmpty(value); - v.map ??= {}; - const dfs: { [df: string]: string[] } = {}; - const inputs = data?.input_metadata?.value ?? data?.input_metadata ?? []; - for (const input of inputs) { - if (!input.dataframes) continue; - const dataframes = input.dataframes as { - [df: string]: { columns: string[] }; - }; - for (const [df, { columns }] of Object.entries(dataframes)) { - dfs[df] = columns; - } - } - const bindings = getModelBindings(data, variant); - function getMap() { - const map: Bindings = {}; - for (const binding of bindings) { - const df = dfsRef.current[binding.id]?.value ?? ""; - const column = columnsRef.current[binding.id]?.value ?? ""; - if (df.length || column.length) { - map[binding.id] = { df, column }; - } - } - return map; - } - return ( -
- - {bindings.length > 0 ? ( - bindings.map((binding: NamedId) => ( - - - - - - - )) - ) : ( - - - - )} - -
{binding.name} - - - - - {variant === "output" ? ( - { - columnsRef.current[binding.id] = el; - }} - value={v.map?.[binding.id]?.column} - onChange={(column, options) => { - const map = getMap(); - // At this point the has not been updated yet. We use the value from the event. - const df = dfsRef.current[binding.id]?.value ?? ""; - map[binding.id] ??= { df, column }; - map[binding.id].column = column; - onChange(JSON.stringify({ map }), options); - }} - /> - ) : ( - - )} -
no bindings
- ); -} diff --git a/lynxkite-app/web/src/workspace/nodes/NodeGroupParameter.tsx b/lynxkite-app/web/src/workspace/nodes/NodeGroupParameter.tsx deleted file mode 100644 index 864ba066aec8bcce5fee136dc38c7eb59aff24d1..0000000000000000000000000000000000000000 --- a/lynxkite-app/web/src/workspace/nodes/NodeGroupParameter.tsx +++ /dev/null @@ -1,48 +0,0 @@ -import NodeParameter, { type UpdateOptions } from "./NodeParameter"; - -interface SelectorType { - name: string; - default: string; - type: { - enum: string[]; - }; -} - -interface ParameterType { - name: string; - default: string; - type: { - type: string; - }; -} - -interface GroupsType { - [key: string]: ParameterType[]; -} - -interface NodeGroupParameterProps { - meta: { selector: SelectorType; groups: GroupsType }; - data: any; - setParam: (name: string, value: any, options: UpdateOptions) => void; -} - -export default function NodeGroupParameter({ meta, data, setParam }: NodeGroupParameterProps) { - const selector = meta.selector; - const selectorValue = data.params[selector.name] || selector.default; - const group = meta.groups[selectorValue] || []; - - return ( - <> - {group.map((meta: any) => ( - - ))} - - ); -} diff --git a/lynxkite-app/web/src/workspace/nodes/NodeParameter.tsx b/lynxkite-app/web/src/workspace/nodes/NodeParameter.tsx deleted file mode 100644 index ef20dea17809012e2c5f71514ef6d1f8ab7bfa4c..0000000000000000000000000000000000000000 --- a/lynxkite-app/web/src/workspace/nodes/NodeParameter.tsx +++ /dev/null @@ -1,147 +0,0 @@ -import jmespath from "jmespath"; -// @ts-ignore -import ArrowsHorizontal from "~icons/tabler/arrows-horizontal.jsx"; -// @ts-ignore -import Help from "~icons/tabler/question-mark.jsx"; -import Tooltip from "../../Tooltip"; -import ModelMapping from "./ModelMappingParameter"; -import NodeGroupParameter from "./NodeGroupParameter"; -import ParameterInput from "./ParameterInput"; - -const BOOLEAN = ""; -const MODEL_TRAINING_INPUT_MAPPING = - ""; -const MODEL_INFERENCE_INPUT_MAPPING = - ""; -const MODEL_OUTPUT_MAPPING = ""; - -function ParamName({ name, doc }: { name: string; doc: string }) { - const help = doc && ( - - - - ); - return ( -
- {name.replace(/_/g, " ")} - {help} -
- ); -} - -interface NodeParameterProps { - name: string; - value: any; - meta: any; - data: any; - setParam: (name: string, value: any, options: UpdateOptions) => void; -} - -export type UpdateOptions = { delay?: number }; - -function findDocs(docs: any, parameter: string) { - for (const sec of docs) { - if (sec.kind === "parameters") { - for (const p of sec.value) { - if (p.name === parameter) { - return p.description; - } - } - } - } -} - -export default function NodeParameter({ name, value, meta, data, setParam }: NodeParameterProps) { - const doc = findDocs(data.meta?.value?.doc ?? [], name); - function onChange(value: any, opts?: UpdateOptions) { - setParam(meta.name, value, opts || {}); - } - return meta?.type?.format === "textarea" ? ( -