@article{doi:10.1186/s13742-015-0077-2,
author = {Pavlopoulos, <NAME> and Malliarakis, Dimitris and Papanikolaou, Nikolas and Theodosiou, Theodosis and Enright, <NAME> and Iliopoulos, Ioannis},
title = {Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future},
journal = {GigaScience},
volume = {4},
number = {1},
pages = {1},
year = {2015},
doi = {10.1186/s13742-015-0077-2},
URL = { + http://dx.doi.org/10.1186/s13742-015-0077-2}
}
@article{d3, 
author={Bostock, <NAME> Ogievetsky, <NAME>},
journal={IEEE Transactions on Visualization and Computer Graphics}, 
title={D3; Data-Driven Documents}, 
year={2011}, 
volume={17}, 
number={12}, 
pages={2301-2309}, 
doi={10.1109/TVCG.2011.185}, 
ISSN={1077-2626}, 
month={Dec}
}
@book{norman2013design,
  title={The design of everyday things: Revised and expanded edition},
  author={<NAME>},
  year={2013},
  publisher={Basic books}
}
@book{shneiderman2010designing,
  title={Designing the user interface: strategies for effective human-computer interaction},
  author={<NAME>},
  year={2010},
  publisher={Pearson Education India}
}
@book{nielsen1994usability,
  title={Usability engineering},
  author={<NAME>},
  year={1994},
  publisher={Elsevier}
}
@article{Schade01122004,
author = {<NAME> Jansen, <NAME> Whiteway, <NAME>, <NAME> <NAME>},
title = {Cold Adaptation in Budding Yeast},
volume = {15}, 
number = {12}, 
pages = {5492-5502}, 
year = {2004}, 
doi = {10.1091/mbc.E04-03-0167}, 
abstract ={We have determined the transcriptional response of the budding yeast Saccharomyces cerevisiae to cold. Yeast cells were exposed to 10°C for different lengths of time, and DNA microarrays were used to characterize the changes in transcript abundance. Two distinct groups of transcriptionally modulated genes were identified and defined as the early cold response and the late cold response. A detailed comparison of the cold response with various environmental stress responses revealed a substantial overlap between environmental stress response genes and late cold response genes. In addition, the accumulation of the carbohydrate reserves trehalose and glycogen is induced during late cold response. These observations suggest that the environmental stress response (ESR) occurs during the late cold response. The transcriptional activators Msn2p and Msn4p are involved in the induction of genes common to many stress responses, and we show that they mediate the stress response pattern observed during the late cold response. In contrast, classical markers of the ESR were absent during the early cold response, and the transcriptional response of the early cold response genes was Msn2p/Msn4p independent. This implies that the cold-specific early response is mediated by a different and as yet uncharacterized regulatory mechanism.}, 
URL = {http://www.molbiolcell.org/content/15/12/5492.abstract}, 
journal = {Molecular Biology of the Cell} 
}
@book{Tufte:1986:VDQ:33404,
 author = {Tufte, <NAME>},
 title = {The Visual Display of Quantitative Information},
 year = {1986},
 isbn = {0-9613921-0-X},
 publisher = {Graphics Press},
 address = {Cheshire, CT, USA},
} 
@book{card1999readings,
  title={Readings in information visualization: using vision to think},
  author={<NAME> and Mackinlay, <NAME> and <NAME>},
  year={1999},
  publisher={<NAME>}
}
@article{peerj,
  author = {Dahlquist, <NAME> and Dionisio, <NAME> and Fitzpatrick, <NAME> and Anguiano, <NAME> and Varshneya, <NAME> Southwick, <NAME> and <NAME>},
  title = {GRNsight: a web application and service for visualizing models of small- to medium-scale gene regulatory networks},
  volume = {2},
  pages = {e85},
  year = {2016},
  doi = {10.7717/peerj-cs.85},
  url = {https://peerj.com/articles/cs-85/},
  journal = {PeerJ Computer Science}
}