clear; close all; clc;

%% Path names

toolboxPath=fileparts(fileparts(fileparts(mfilename('fullpath'))));
docPath=fullfile(fileparts(fileparts(fileparts(mfilename('fullpath')))),'docs');
libPath=fullfile(fileparts(fileparts(fileparts(mfilename('fullpath')))),'lib');
docToolsPath=fullfile(fileparts(fileparts(fileparts(mfilename('fullpath')))),'docs','docTools');

pathNames={docToolsPath,libPath,docPath};

%%

fileExtension='.m'; %Extension to remove boilerplate from

footerTargetStart='% _*GIBBON footer text*_ '; %Target for removal

%N.B. Removal is up to end from the start so make sure the target is
%appropriately set!!!!!

%% Removing footer text

numPaths=numel(pathNames); 
for q_path=1:1:numPaths
    pathName=pathNames{q_path};     
    files = dir(fullfile(pathName,'*.m'));
    files={files(1:end).name};
    files=sort(files(:));
    numFiles=numel(files);    
    for q_file=1:1:numFiles
        fileName=fullfile(pathName,files{q_file});
        [T_now]=txtfile2cell(fileName);
        targetStartIndex = find(strcmp(footerTargetStart,T_now));       
        if ~isempty(targetStartIndex)            
            targetStartIndex=targetStartIndex(end); %Keep last occurance
            T_now=T_now(1:targetStartIndex-1-1); %NB -1 is used to remove %% above target 
            cell2txtfile(fileName,T_now,0,0);
        end
    end
end

%% 
% _*GIBBON footer text*_ 
% 
% License: <https://github.com/gibbonCode/GIBBON/blob/master/LICENSE>
% 
% GIBBON: The Geometry and Image-based Bioengineering add-On. A toolbox for
% image segmentation, image-based modeling, meshing, and finite element
% analysis.
% 
% Copyright (C) 2006-2022 Kevin Mattheus Moerman and the GIBBON contributors
% 
% This program is free software: you can redistribute it and/or modify
% it under the terms of the GNU General Public License as published by
% the Free Software Foundation, either version 3 of the License, or
% (at your option) any later version.
% 
% This program is distributed in the hope that it will be useful,
% but WITHOUT ANY WARRANTY; without even the implied warranty of
% MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
% GNU General Public License for more details.
% 
% You should have received a copy of the GNU General Public License
% along with this program.  If not, see <http://www.gnu.org/licenses/>.
